View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-INSERTION-11 (Length: 424)
Name: NF0235-INSERTION-11
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-INSERTION-11 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 52720249 - 52719895
Alignment:
| Q |
8 |
taaccatggattgaattgctaaagtttaattgaaggtgtaattgttagtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcaga |
107 |
Q |
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| T |
52720249 |
taaccatggattgaattgctaaagtttaattgaaggtgtaattgttagtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcaga |
52720150 |
T |
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| Q |
108 |
gtggaagaaagcgtctcaatcaggcagggtcatttttatttgggttacagttgatttatggctgtaacaaataatgtaggctggctggcacaaacttggt |
207 |
Q |
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| T |
52720149 |
gtggaagaaagcgtctcgatcaggcagggtcatttttatttgggttacagttgatttatggctgtaacaaataatgtaggctggctggcacaaacttggt |
52720050 |
T |
|
| Q |
208 |
taacaaatggaggtttcacaagcattaagggtattaattataggctaaaatgttgttttggtcccttaacgnnnnnnnnnnnnnagtatcgctttagtca |
307 |
Q |
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| T |
52720049 |
taacaaatggaggcttcacaggcatttagggtattaattataggctaaaatgttgttttggtcccttaac---cttttttttttagtattgctttagtca |
52719953 |
T |
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| Q |
308 |
agtaataaaaaattcgtttagatctcttaagtccttctccgttatatgttttggtctc |
365 |
Q |
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| T |
52719952 |
agtaataaaaagtccgtttagatctcttaagtccttctccgttatatgttttggtctc |
52719895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 52711349 - 52711144
Alignment:
| Q |
47 |
aattgttagtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcaatcaggcagggtcat------ |
140 |
Q |
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| T |
52711349 |
aattgctagtgagatgaaatgaaaagtaacactaattttgcattttatataggttagcagagtgtaagaaagcgtctcaatcaggcaaggtcatccatca |
52711250 |
T |
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| Q |
141 |
-ttttatttgggttacagttgatttatggctgtaacaaataatgtaggctggctggcacaaacttggttaacaaatggaggtttcacaagcattaagggt |
239 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||| ||||| |
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| T |
52711249 |
tttttatttgggttacaattgatttatggctgtaacaaataatgtaggctggccggcacaaacttggttaacaaatggaagctccacaagcatttagggt |
52711150 |
T |
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| Q |
240 |
attaat |
245 |
Q |
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|||||| |
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| T |
52711149 |
attaat |
52711144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 52719763 - 52719705
Alignment:
| Q |
366 |
atctattgtaagtaatagtacaccatcaccatctcatattgtttttccctttcttcctt |
424 |
Q |
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| T |
52719763 |
atctattgtaagtaatagtacaccatcaccatctcatattgtttttccctttcttcctt |
52719705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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