View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-INSERTION-13 (Length: 864)

Name: NF0235-INSERTION-13
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-INSERTION-13
NF0235-INSERTION-13
[»] chr2 (4 HSPs)
chr2 (395-860)||(6256567-6257031)
chr2 (8-329)||(6257097-6257418)
chr2 (401-482)||(12328764-12328845)
chr2 (239-308)||(12328933-12329002)
[»] chr4 (12 HSPs)
chr4 (395-832)||(51206831-51207268)
chr4 (8-329)||(43428874-43429200)
chr4 (395-642)||(43429303-43429550)
chr4 (8-329)||(51206442-51206765)
chr4 (643-817)||(43429510-43429684)
chr4 (395-582)||(21438276-21438463)
chr4 (236-325)||(21438531-21438620)
chr4 (712-775)||(21437545-21437608)
chr4 (713-775)||(31137017-31137079)
chr4 (522-582)||(31137546-31137607)
chr4 (417-481)||(2566024-2566088)
chr4 (438-473)||(31137628-31137663)
[»] chr3 (2 HSPs)
chr3 (395-501)||(54523225-54523330)
chr3 (236-325)||(54523067-54523156)
[»] chr1 (4 HSPs)
chr1 (401-482)||(4437170-4437251)
chr1 (401-482)||(25668968-25669049)
chr1 (239-308)||(4437013-4437082)
chr1 (239-308)||(25668811-25668880)
[»] chr7 (1 HSPs)
chr7 (236-308)||(26785049-26785121)
[»] chr6 (2 HSPs)
chr6 (236-308)||(15671800-15671872)
chr6 (236-308)||(33487474-33487546)


Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 395 - 860
Target Start/End: Complemental strand, 6257031 - 6256567
Alignment:
Q  395 acttgatgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatgacacttcctgtt 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6257031 acttgatgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgaataacatagaagaatgaatgacacttcctgtt 6256932  T
Q  495 ctttatgatatgatttgaaagtttagttttgtgatcatgctgacatatttatgtatcaataacttaaaattgtaatgcagaatttcaatttgtgatcatg 594  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6256931 ctttatgatatgatttgaaagtttagttttgtgatcatgctggcatatttttgtatcaataacttaaaattgtaatgcataatttcaatttgtgatcatg 6256832  T
Q  595 ctagcttattttgtatcagtaacttattttggtgaatgcaaaattttaattttgtatcagtagcttattttggtgaatgcagaattttagttaccaagta 694  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||    
T  6256831 ctagcttattttgtatcagtaacttattttggtgaatgcagaattttaatttt-tatcagtaacttattttggtgaatgcaaaatttcagttaccaagta 6256733  T
Q  695 tcactcctattattatgatgtgcctacttttatgcagctcataacaaaatgcctatttttatgtcaaaatgaactagaataaaataacagcattttggtg 794  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256732 tcactcctgttattatgatgtgcctacttttatgcagctcataacaaaatgcctatttttatgtcaaaatgaactagaataaaataacagcattttggtg 6256633  T
Q  795 tgttttggtggctgacaattttgcagtcttatgagcagttgtgctggtttcttctatgtatcagca 860  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||||| ||||| |||||||||||||    
T  6256632 tgttttggtggctgacagttttgcagttttatcagcagttgtgctgttttctgctatgtatcagca 6256567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 6257418 - 6257097
Alignment:
Q  8 catttgtcatctaactattaaccatattcaactatcgatccctaaaatatatattttttctatgaagtttcatttgccttgttatatcacctcatattca 107  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  6257418 catttgccatctaactattaatcatattcaactatcgatccctaaaatatatcttttttctatgaagtttcatttgccttgttatatctcctcatattca 6257319  T
Q  108 actattgagttacataaccnnnnnnnnncttttcatgggatgatattgggtttatatatgggtgtgtattagctggttttttctt--ttctattttcctg 205  Q
    ||||||||||||  ||||          ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||||| ||    
T  6257318 actattgagttatgtaac--ttttttttcttttcatgggatgatattgggtttatatatgggtgtgtattagctgttttttttttctttctattttcttg 6257221  T
Q  206 ttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  6257220 ttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgacagccgcaactgtccccaaagatcatctccataattttggtaa 6257121  T
Q  306 gaagcccctttcaaaatgtactta 329  Q
     ||| |||||||||||||||||||    
T  6257120 aaagtccctttcaaaatgtactta 6257097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 401 - 482
Target Start/End: Complemental strand, 12328845 - 12328764
Alignment:
Q  401 tgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatg 482  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  12328845 tgtttttaggattggaagaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataacatagaagaatgaatg 12328764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 12329002 - 12328933
Alignment:
Q  239 atgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaa 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12329002 atgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaa 12328933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 395 - 832
Target Start/End: Original strand, 51206831 - 51207268
Alignment:
Q  395 acttgatgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatgacacttcctgtt 494  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||    
T  51206831 acttgatgtttttaggattggaagaatggcatagaaaaaggatgaaggaagttagacaaaccagatgaataacatagaagaatgaatgacacttcttatt 51206930  T
Q  495 ctttatgatatgatttgaaagtttagttttgtgatcatgctgacatatttatgtatcaataacttaaaattgtaatgcagaatttcaatttgtgatcatg 594  Q
    |||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51206931 ctttatgatatgatttgaaagtttagttttgtgatcatacttgcatatttttgtatcaataacttaaaattgtaatgcagaattacaatttgtgatcatg 51207030  T
Q  595 ctagcttattttgtatcagtaacttattttggtgaatgcaaaattttaattttgtatcagtagcttattttggtgaatgcagaattttagttaccaagta 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||    
T  51207031 ctagcttattttgtatcagtaacttattttggtgaatgcaaaattttaattttgtatcagtaatttattttggtgaatgtagaatttcagttaccaagta 51207130  T
Q  695 tcactcctattattatgatgtgcctacttttatgcagctcataacaaaatgcctatttttatgtcaaaatgaactagaataaaataacagcattttggtg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  51207131 tcactcctattattatgatgtgcctacttttatgcagctcataacaaaatgtctatttttatgtcaaaatgaactagaataaaataacagcatttttgtg 51207230  T
Q  795 tgttttggtggctgacaattttgcagtcttatgagcag 832  Q
    ||||||||||||||||| |||||| || |||| |||||    
T  51207231 tgttttggtggctgacagttttgcggttttatcagcag 51207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 43428874 - 43429200
Alignment:
Q  8 catttgtcatctaactattaaccatattcaactatcgatccctaaaatatatattttttctatgaagtttcatttgccttgttatatcacctcatattca 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43428874 catttgtcatctaactattaatcatattcaactatcgatccctaaaatatatattttttctatgaaatttcatttgccttgttatatcacctcatattca 43428973  T
Q  108 actattgagttacataaccnnnnnnnnncttttcatgggatgatattgggtttatatatgggtgtgtattagctggtttttt------cttttctatttt 201  Q
    ||||||||||||| ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  43428974 actattgagttacgtaac-tttttttttcttttcatgggatgatattgggtttatatatgggtgtgtattagctggtttttttttttccttttctatttt 43429072  T
Q  202 cctgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttg 301  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43429073 cttgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttg 43429172  T
Q  302 gtaagaagcccctttcaaaatgtactta 329  Q
    ||||||||||||||||||||||||||||    
T  43429173 gtaagaagcccctttcaaaatgtactta 43429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 395 - 642
Target Start/End: Original strand, 43429303 - 43429550
Alignment:
Q  395 acttgatgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatgacacttcctgtt 494  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43429303 acttgatgtttttaggattggaagaatgacatagaagaaggatgaaggaagttagacaaaccagatgaataacatagaagaatgaatgacacttcctgtt 43429402  T
Q  495 ctttatgatatgatttgaaagtttagttttgtgatcatgctgacatatttatgtatcaataacttaaaattgtaatgcagaatttcaatttgtgatcatg 594  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43429403 ctttatgatatgatttgaaagtttagttttgtgatcatgctagcatatttttgtatcaataacttaaaattgtaatgcagaatttcaatttgtgatcatg 43429502  T
Q  595 ctagcttattttgtatcagtaacttattttggtgaatgcaaaatttta 642  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  43429503 ctagcttattttgtatcagtaacttattttggtgaatgcagaatttta 43429550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 51206442 - 51206765
Alignment:
Q  8 catttgtcatctaactattaaccatattcaactatcgatccctaaaatatatattttttctatgaagtttcatttgccttgttatatcacctcatattca 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  51206442 catttgtcatctaactattaatcatattcaactatcgatccctaaaatatatcttttttctatgaagtttcatttgccttattatatctcctcatgttca 51206541  T
Q  108 actattgagttacataaccnnnnnnnnncttttcatgggatgatattgggtttatatatgggtgtgtattagctggttttttcttttc----tattttcc 203  Q
    ||||||||||||| ||||          ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||    |||||||     
T  51206542 actattgagttacgtaac-tttttttttcttttcatgggatgatattaggtttatatatgggtgtgtattagctagtttttttttttctttctattttct 51206640  T
Q  204 tgttggttttattgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggt 303  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  51206641 tgttggttttactgctgttcaatggtgggtttggcatgcggtgagtatgtgcatcatgaca-ccgcaattgtccccaaagatcatctccattattttggt 51206739  T
Q  304 aagaagcccctttcaaaatgtactta 329  Q
    ||||||||||||||||||||||||||    
T  51206740 aagaagcccctttcaaaatgtactta 51206765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 643 - 817
Target Start/End: Original strand, 43429510 - 43429684
Alignment:
Q  643 attttgtatcagtagcttattttggtgaatgcagaattttagttaccaagtatcactcctattattatgatgtgcctacttttatgcagctcataacaaa 742  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43429510 attttgtatcagtaacttattttggtgaatgcagaattttagttaccaagtatcactcctattattatgatgtgcctacttttatgcagctcataacaaa 43429609  T
Q  743 atgcctatttttatgtcaaaatgaactagaataaaataacagcattttggtgtgttttggtggctgacaattttg 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  43429610 atgcctatttttatgtcaaaatgaactagaataaaataacagcattttggtgagttttggtggctgacagttttg 43429684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 395 - 582
Target Start/End: Complemental strand, 21438463 - 21438276
Alignment:
Q  395 acttgatgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatgacacttcctgtt 494  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  21438463 acttgatgtttt-aggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgaataacatagaagaatgaatgacacttcatgtt 21438365  T
Q  495 ctttatgatatgatttgaaagtttagttttgtgatcatgctgacatatttatgtatcaataacttaaaattgt-aatgcagaatttcaa 582  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||| |||||||||||||||    
T  21438364 ctttatgaaatgatttgaaagtttagttttgtgatcatgttggcatatttttgtatcagtaacttaaaattgtgaatgcagaatttcaa 21438276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 21438620 - 21438531
Alignment:
Q  236 ggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgta 325  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21438620 ggcatgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgta 21438531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 21437545 - 21437608
Alignment:
Q  712 atgtgcctacttttatgcagctcataacaaaatgcctatttttatgtcaaaatgaactagaata 775  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||    
T  21437545 atgtgcctacttttatgcagctcataacaaaatgcttatttttctgccaaaattaactagaata 21437608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 713 - 775
Target Start/End: Original strand, 31137017 - 31137079
Alignment:
Q  713 tgtgcctacttttatgcagctcataacaaaatgcctatttttatgtcaaaatgaactagaata 775  Q
    |||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||    
T  31137017 tgtgcctacttttatgcagctcataacaaaatgcttatttttgtgccaaaattaactagaata 31137079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 582
Target Start/End: Complemental strand, 31137607 - 31137546
Alignment:
Q  522 tttgtgatcatgctgacatatttatgtatcaataacttaaaattgt-aatgcagaatttcaa 582  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||    
T  31137607 tttgtgatcatgctggcatatttttgtatcagtaacttaaaattgtgaatgcagaatttcaa 31137546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 2566088 - 2566024
Alignment:
Q  417 agaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaat 481  Q
    |||||| | ||||||  |||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  2566088 agaatgacgtagaaggcggatgaaggaagttagacaaacaagatgaataacatagaagcatgaat 2566024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 473
Target Start/End: Complemental strand, 31137663 - 31137628
Alignment:
Q  438 gaaggaagttagacaaaccagatgagtaacatagaa 473  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31137663 gaaggaagttagacaaaccagatgaataacatagaa 31137628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 395 - 501
Target Start/End: Original strand, 54523225 - 54523330
Alignment:
Q  395 acttgatgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatgacacttcctgtt 494  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  54523225 acttgatgtttt-aggattggaagaatggcatagaagaaggatgaagaaagttagacaaaccagatgaataacatagaagaatgaatgacacttcatgtt 54523323  T
Q  495 ctttatg 501  Q
    |||||||    
T  54523324 ctttatg 54523330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 54523067 - 54523156
Alignment:
Q  236 ggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgta 325  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54523067 ggcatgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaagcccctttcaaaatgta 54523156  T

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Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 401 - 482
Target Start/End: Original strand, 4437170 - 4437251
Alignment:
Q  401 tgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatg 482  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  4437170 tgtttttaggattggaagaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataacatagaagaatgaatg 4437251  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 401 - 482
Target Start/End: Original strand, 25668968 - 25669049
Alignment:
Q  401 tgtttttaggattggaagaatggcatagaagaaggatgaaggaagttagacaaaccagatgagtaacatagaagaatgaatg 482  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  25668968 tgtttttaggattggaagaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataacatagaagaatgaatg 25669049  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 4437013 - 4437082
Alignment:
Q  239 atgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaa 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4437013 atgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaa 4437082  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 25668811 - 25668880
Alignment:
Q  239 atgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaa 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25668811 atgcggtgagtatgtgcatcatgacagccgcaattgtccccaaagatcatctccataattttggtaagaa 25668880  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 26785049 - 26785121
Alignment:
Q  236 ggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaa 308  Q
    |||||| ||||| |||| |||||||| |||||||||||||||  | | || ||||||||| ||||||||||||    
T  26785049 ggcatgtggtgaatatgcgcatcatgacagccgcaattgtcctaacaaataatctccatagttttggtaagaa 26785121  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 15671872 - 15671800
Alignment:
Q  236 ggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaa 308  Q
    |||||| ||||| |||| |||||||| |||||||||||||||  | | || ||||||||| ||||||||||||    
T  15671872 ggcatgtggtgaatatgcgcatcatgacagccgcaattgtcctaacaaataatctccatagttttggtaagaa 15671800  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 33487474 - 33487546
Alignment:
Q  236 ggcatgcggtgagtatgtgcatcatggcagccgcaattgtccccaaagatcatctccataattttggtaagaa 308  Q
    |||||| ||||| |||| |||||||| |||||||||||||||  | | || ||||||||| ||||||||||||    
T  33487474 ggcatgtggtgaatatgcgcatcatgacagccgcaattgtcctaacaaataatctccatagttttggtaagaa 33487546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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