View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235-INSERTION-16 (Length: 571)
Name: NF0235-INSERTION-16
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-INSERTION-16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 571
Target Start/End: Original strand, 32582457 - 32583013
Alignment:
| Q |
8 |
cttgacatggtggttacttccacaactcgacgctgcatcttcatcgttacggtgattctcaacatgcgccagaacttgttctaattcgttacgtaacgtg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582457 |
cttgacatggtggttacttccacaactcgacgctgcatcgtcatcgttacggtgattctcaacatgcgccagaacttgttctaattcgttacgtaacgtg |
32582556 |
T |
|
| Q |
108 |
tttacagcagattcgttagtcaaagccatttctctccaaatctgattctccataatcagtgttttcgctttttcttgaagcattagattttgtttctcca |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582557 |
tttacagcagattcgtttgtcaaagccatttctctccaaatctgattctccataatcagtgttttcgctttttcttgaagcattagattttgtttctcca |
32582656 |
T |
|
| Q |
208 |
ttctctgaatctcttcttctttttgcttcagtttctttgttactgcttcttggattgccgcttgtagcattcttgattgcttcaatctttgctcttctat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582657 |
ttctctgaatctcttcttctttttgcttcagtttctttgttactgcttcttggattgccgcttgtagcattcttgattgcttcaatctttgctcttctat |
32582756 |
T |
|
| Q |
308 |
ctccattctcactctctctgtctgttgattaacaaatggagtattaattagtaataattaaccataatcacataatctaagcaataaatctgttacttcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
32582757 |
ctccattctcactctctctgtctgttaattaacaaatgaagtattcattagtaataattaaccataatcacaaaatctaagcaataaatctgtaacttcc |
32582856 |
T |
|
| Q |
408 |
ttttaacagtttctttttccttgaacaaaatttnnnnnnnnnnngtgaaagatgaattaatttgcttacatgttgagcaatgaagagatcgatttcagat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582857 |
ttttaacagtttctttttccttgaacaaaat------aaaaaaagtgaaagatgaattaa-ttgcttacatgttgagcaatgaagagatcgatttcagat |
32582949 |
T |
|
| Q |
508 |
tgttgattttggagatgataaaggagattctgatcaacaaaggaaggttgagatgagagtttga |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582950 |
tgttgattttggagatgataaaggagattctgatcaacaaaggaaggttgagatgagagtttga |
32583013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 38146675 - 38146610
Alignment:
| Q |
505 |
gattgttgattttggagatgataaaggagattctgatcaacaaaggaaggttgagatgagagtttg |
570 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38146675 |
gattgttgattttggaataaatagaggagattcttatcaacaaaggaaggttgagatgagagtttg |
38146610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1180 times since January 2019
Visitors: 2389