View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-INSERTION-3 (Length: 1131)

Name: NF0235-INSERTION-3
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-INSERTION-3
NF0235-INSERTION-3
[»] chr3 (4 HSPs)
chr3 (8-1026)||(36952938-36953959)
chr3 (699-807)||(16990680-16990788)
chr3 (688-842)||(272241-272397)
chr3 (723-806)||(2505405-2505489)
[»] chr2 (12 HSPs)
chr2 (694-789)||(29999053-29999149)
chr2 (691-818)||(30834397-30834525)
chr2 (681-796)||(16807281-16807397)
chr2 (681-796)||(16846562-16846678)
chr2 (694-841)||(20431464-20431614)
chr2 (711-788)||(41003631-41003708)
chr2 (723-759)||(5358617-5358653)
chr2 (729-807)||(20252803-20252882)
chr2 (803-851)||(37316419-37316467)
chr2 (729-807)||(20364328-20364409)
chr2 (726-817)||(37094886-37094979)
chr2 (667-759)||(44331739-44331832)
[»] chr5 (5 HSPs)
chr5 (697-826)||(37034565-37034696)
chr5 (711-759)||(5302374-5302422)
chr5 (691-759)||(6042142-6042210)
chr5 (804-851)||(25946073-25946119)
chr5 (681-796)||(11846086-11846202)
[»] chr7 (5 HSPs)
chr7 (699-820)||(6819948-6820069)
chr7 (720-820)||(34569376-34569476)
chr7 (706-774)||(41468711-41468779)
chr7 (812-849)||(45996811-45996848)
chr7 (723-806)||(47839548-47839632)
[»] chr6 (7 HSPs)
chr6 (710-796)||(10431779-10431865)
chr6 (729-807)||(8648019-8648097)
chr6 (700-774)||(11633951-11634026)
chr6 (700-774)||(11616210-11616285)
chr6 (680-842)||(23402151-23402315)
chr6 (679-759)||(11115190-11115269)
chr6 (667-759)||(22021631-22021724)
[»] chr4 (5 HSPs)
chr4 (688-768)||(15023464-15023543)
chr4 (743-853)||(5518884-5518994)
chr4 (695-807)||(15601813-15601924)
chr4 (686-759)||(8749893-8749967)
chr4 (699-807)||(25107187-25107293)
[»] scaffold1128 (1 HSPs)
scaffold1128 (710-826)||(1414-1531)
[»] chr8 (9 HSPs)
chr8 (688-826)||(33899040-33899176)
chr8 (690-842)||(16890489-16890643)
chr8 (681-806)||(27988545-27988671)
chr8 (681-806)||(28045847-28045973)
chr8 (699-807)||(31261547-31261651)
chr8 (693-759)||(37713996-37714063)
chr8 (699-759)||(16196899-16196960)
chr8 (723-774)||(42449021-42449072)
chr8 (699-807)||(42433589-42433697)
[»] scaffold0019 (1 HSPs)
scaffold0019 (695-759)||(66426-66491)
[»] chr1 (1 HSPs)
chr1 (691-806)||(17333328-17333444)


Alignment Details
Target: chr3 (Bit Score: 917; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 917; E-Value: 0
Query Start/End: Original strand, 8 - 1026
Target Start/End: Complemental strand, 36953959 - 36952938
Alignment:
Q  8 aagaataccttgacaagcagttttatttccagcattaatcactaaactatatttattaaaagaaactttaacataattgatatgaattccattatagaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36953959 aagaataccttgacaagcagttttatttccagcattaatcactaaactatctttattaaaagaaactttaacataattgatatgaattccattatagaag 36953860  T
Q  108 ttatggagatacaaagccatgtcatagttgaagaaagagcaggagagaaaaaatgccaaagttttgtctcattctagcagttaaagattaatccatcttg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36953859 ttatggagatacaaagccatgtcatagttgaagaaagagcaggaaagaaaaaatgccaaagttttgtctcattctagcagttaaagattaatccatcttg 36953760  T
Q  208 cagatcacctggggcgcaaggcgtttctgcgtgaaatggccacaatttagcaaaacacaagggtttttgaagnnnnnnnactagaaaatacgattgaaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  36953759 cagatcacctggggcgcaaggcgtttctgcgtgaaatggccacaatttagcaaaacacaagggtttttgaagtttttttactagaaaatacgattgaaac 36953660  T
Q  308 cttttgggtgcaaaaaagtggcaatttcaactcttggaaacaagatttgagagctaaaattcatattttagatgtgcaatttcccggtctctattgtaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36953659 cttttgggtgcaaaaaagtggcaatttcaactcttggaaacaagatttgagagctaaaattcatattttagatgtgcaatttcccggtctctattgtaat 36953560  T
Q  408 gcatcccactattatgagtagataaatttccattgattacaatgtagatgagcctctttcgatctacatgaaccatgtaattcatgagtccttttatgca 507  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36953559 gcatcccactattatgagtagataaatctccattgattacaatgtagatgagcctctttcgatctacatgaaccatgtaattcatgagtgcttttatgca 36953460  T
Q  508 attgaatgtgaatgatgatttggttatttttgtgcttaatgattttcttt-atcaatttgaaatttaatttagggaatattccactactgaccaaaggtt 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36953459 attgaatgtgaatgatgatttggttatttttgtgcttaatgattttcttttatcaatttgaaatttaatttagggaatattccactactgaccaaaggtt 36953360  T
Q  607 ttttaacgcataggataattgttcattagatgctaactttggtaatattaaattgtttacgagaaatgttagatggtgtctccggggcactagttaagga 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  36953359 ttttaacgcataggataattgttcattagatgctgactttggtaatattaaattgtttacgcgaaatgttagatggtgcctccggagcactagttaagga 36953260  T
Q  707 tgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatacttacctttt 806  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36953259 tgctaagaaagagataatataatagttattgcattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatacttacctttt 36953160  T
Q  807 tggcatccttaaccggtgtctccgaggcaccggttaatatgacccatgtgataaaaataattatcattcattcatgattttgataatactatttaacttt 906  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36953159 tggcatccttaaccggtgtctccaaggcaccggttaacatgacccatgtgataaaaataattatcattcattcatgattttgataatactatttaacctt 36953060  T
Q  907 agaaattagggcttgtgtcagataaatgggacttttgaaaacactagttcctattgttggcttctctgatgatgctc-ataggcctctc-aaattactaa 1004  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  36953059 agaaattagggtttgtgtcagataaatgggacttttgaaaacactagttcctattgttggcttctctgatgatgctcaataggcctctcaaaattactaa 36952960  T
Q  1005 cttagctaaaaagtcgattgaa 1026  Q
    ||| ||||||||||||||||||    
T  36952959 cttggctaaaaagtcgattgaa 36952938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 699 - 807
Target Start/End: Complemental strand, 16990788 - 16990680
Alignment:
Q  699 gttaaggatgctaaaaaag-agataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatac 797  Q
    |||||||||| |||||||| | || | |||||||||||| |||| ||||| ||||||||||||||| |||||| ||| ||||||  ||||||| |||||     
T  16990788 gttaaggatgataaaaaaggaaattagataatagttattgcattaaaaat-gtgtaattaatactacaaaagtaaaaaatgtttttttttatgataataa 16990690  T
Q  798 ttaccttttt 807  Q
    || |||||||    
T  16990689 tttccttttt 16990680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 842
Target Start/End: Original strand, 272241 - 272397
Alignment:
Q  688 ccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-gtttcctt 785  Q
    |||||||||| |||||||||   ||||| || || ||||| |||||| | |||||||| |||||||||||||   ||| ||||||||| || ||||||||    
T  272241 ccggggcactggttaaggatatgaaaaaggaaattatatagtagttaatgcattgaaa-ttgtgtaattaatttataataaagtcaaaaatagtttcctt 272339  T
Q  786 ttatggtaatacttacctttt-tggcatccttaaccggtgtctccgaggcaccggtta 842  Q
    ||||||||||| || |||||| ||| || ||||| ||||| | | | |||||||||||    
T  272340 ttatggtaataattcccttttatggtatgcttaatcggtgccccgggggcaccggtta 272397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 723 - 806
Target Start/End: Original strand, 2505405 - 2505489
Alignment:
Q  723 atataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-gtttccttttatggtaatacttacctttt 806  Q
    ||||| |||||| | |||||||| ||||||||||||| | ||| ||||||||| || ||||||||||||||||||| || ||||||    
T  2505405 atatagtagttagtgcattgaaa-ttgtgtaattaattcataataaagtcaaaaatagtttccttttatggtaataattccctttt 2505489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 694 - 789
Target Start/End: Complemental strand, 29999149 - 29999053
Alignment:
Q  694 cactagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttat 789  Q
    |||| |||||| ||||||||||||| | | ||||||||||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  29999149 cactggttaagaatgctaaaaaagaaaattatataatagttcttgcattgaaaattgtgtaattaatactaaaaaagtcaaaaatatttccttttat 29999053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 691 - 818
Target Start/End: Complemental strand, 30834525 - 30834397
Alignment:
Q  691 gggcactagttaaggatgctaaaaaag-agataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttat 789  Q
    |||||| |||||||||||||||||||| | || |||||||||||||| ||||||||| ||||||||||||||||||||| | ||| |  ||| |||||||    
T  30834525 gggcacaagttaaggatgctaaaaaaggaaattatataatagttattgcattgaaaactgtgtaattaatactaaaaaaataaaaaacattttcttttat 30834426  T
Q  790 ggtaatacttacctttttggcatccttaa 818  Q
    | ||||| ||  ||||||||||| |||||    
T  30834425 gataataattttctttttggcattcttaa 30834397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 681 - 796
Target Start/End: Complemental strand, 16807397 - 16807281
Alignment:
Q  681 ggtgtctccggggcactagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgt 779  Q
    |||| ||||| |||| | |||||||||| | ||||||| | | ||||| |||||||| ||||||||| ||||||||||||||||||||||| ||| ||||    
T  16807397 ggtgcctccgaggcattggttaaggatgtttaaaaagaaaattatatagtagttattgcattgaaaactgtgtaattaatactaaaaaagtaaaatatgt 16807298  T
Q  780 ttccttttatggtaata 796  Q
    ||||||||||| |||||    
T  16807297 ttccttttatgctaata 16807281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 681 - 796
Target Start/End: Complemental strand, 16846678 - 16846562
Alignment:
Q  681 ggtgtctccggggcactagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgt 779  Q
    |||| ||||| |||| | |||||||||| | ||||||| | | ||||| |||||||| ||||||||| ||||||||||||||||||||||| ||| ||||    
T  16846678 ggtgcctccgaggcattggttaaggatgtttaaaaagaaaattatatagtagttattgcattgaaaactgtgtaattaatactaaaaaagtaaaatatgt 16846579  T
Q  780 ttccttttatggtaata 796  Q
    ||||||||||| |||||    
T  16846578 ttccttttatgctaata 16846562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 694 - 841
Target Start/End: Original strand, 20431464 - 20431614
Alignment:
Q  694 cactagttaaggatgctaaaaaag-agataatataatagttattacattgaaaattgtgtaattaatact-aaaaaagtcaaacatgtttccttttatgg 791  Q
    |||||||||||||||  ||||||| | || ||||  |||||||| ||||||||| ||||||||||||||| ||||||||||||  ||||  ||||||||     
T  20431464 cactagttaaggatgtcaaaaaaggaaattatattgtagttattgcattgaaaactgtgtaattaatactaaaaaaagtcaaaagtgttatcttttatga 20431563  T
Q  792 taatacttacc-tttttggcatccttaaccggtgtctccgaggcaccggtt 841  Q
    ||||| || || |||||||||| ||||||| ||| | | ||| ||||||||    
T  20431564 taataatttccttttttggcatacttaaccagtgccccggagacaccggtt 20431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 711 - 788
Target Start/End: Complemental strand, 41003708 - 41003631
Alignment:
Q  711 aaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttcctttta 788  Q
    |||||||| || ||| |||||||||| ||||| |||  |||||||||||||||||| ||| ||| |||||||||||||    
T  41003708 aaaaaagaaattatacaatagttattgcattggaaacggtgtaattaatactaaaatagtaaaaaatgtttcctttta 41003631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 723 - 759
Target Start/End: Original strand, 5358617 - 5358653
Alignment:
Q  723 atataatagttattacattgaaaattgtgtaattaat 759  Q
    |||||||||||||||||||||||||||||||||||||    
T  5358617 atataatagttattacattgaaaattgtgtaattaat 5358653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 729 - 807
Target Start/End: Original strand, 20252803 - 20252882
Alignment:
Q  729 tagttattacattgaaaattgtgtaattaatact-aaaaaagtcaaacatgtttccttttatggtaatacttaccttttt 807  Q
    |||||||| ||||||||| ||||||||||||||| |||||| ||||| || ||| |||||||| ||||| || |||||||    
T  20252803 tagttattgcattgaaaactgtgtaattaatactaaaaaaaatcaaaaatattttcttttatgataataatttccttttt 20252882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 803 - 851
Target Start/End: Complemental strand, 37316467 - 37316419
Alignment:
Q  803 tttttggcatccttaaccggtgtctccgaggcaccggttaatatgaccc 851  Q
    |||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  37316467 tttttggcatccttaaccagtgccccggaggcaccggttaatatgaccc 37316419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 729 - 807
Target Start/End: Original strand, 20364328 - 20364409
Alignment:
Q  729 tagttattacattgaaaattgtgtaattaatactaaaa---aagtcaaacatgtttccttttatggtaatacttaccttttt 807  Q
    |||||||| ||||||||| |||||||||||||||||||   ||||||||  ||||  |||||||| ||||| || |||||||    
T  20364328 tagttattgcattgaaaactgtgtaattaatactaaaaaaaaagtcaaaagtgttatcttttatgataataatttccttttt 20364409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 817
Target Start/End: Original strand, 37094886 - 37094979
Alignment:
Q  726 taatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatg-tttccttttatggtaat-acttacctttttggcatcctta 817  Q
    ||||||| ||| |||||||||  |||||||||||| |||| |||||||| ||| |||  |||||||||||| | || | |||||||||||||||    
T  37094886 taatagtaattgcattgaaaaccgtgtaattaatattaaagaagtcaaaaatgttttttttttatggtaataattttcttttttggcatcctta 37094979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 667 - 759
Target Start/End: Original strand, 44331739 - 44331832
Alignment:
Q  667 gagaaatgttagatggtgtctccggggcactagttaaggatgct-aaaaaagagataatataatagttattacattgaaaattgtgtaattaat 759  Q
    |||||||||||   |||| | |||||||||||||||||| | || ||||||||  | ||||| || ||||| |||||||| |||||||||||||    
T  44331739 gagaaatgttaatcggtgcccccggggcactagttaaggttactaaaaaaagaatttatatagtaattattgcattgaaacttgtgtaattaat 44331832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 697 - 826
Target Start/End: Complemental strand, 37034696 - 37034565
Alignment:
Q  697 tagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaat 795  Q
    ||||||| ||||||||||| || | | ||| | ||| |||| ||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  37034696 tagttaatgatgctaaaaatgaaaattatagagtagctattgcattgaaaactgtgtaattaatattaaaaaagtcaaaaatgtttctttttatgataat 37034597  T
Q  796 acttacc-tttttggcatccttaaccggtgtc 826  Q
    | ||||| ||||||||||| ||||||||||||    
T  37034596 aattaccttttttggcatctttaaccggtgtc 37034565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 711 - 759
Target Start/End: Complemental strand, 5302422 - 5302374
Alignment:
Q  711 aaaaaagagataatataatagttattacattgaaaattgtgtaattaat 759  Q
    |||||||| || ||||||||||||||  |||||||||||||||||||||    
T  5302422 aaaaaagaaattatataatagttattgtattgaaaattgtgtaattaat 5302374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 691 - 759
Target Start/End: Complemental strand, 6042210 - 6042142
Alignment:
Q  691 gggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaat 759  Q
    ||||||| ||||| ||| |||||||| | || ||||| || ||||| ||||||||||||||||||||||    
T  6042210 gggcactggttaaagatactaaaaaaaaaattatatagtaattattgcattgaaaattgtgtaattaat 6042142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 804 - 851
Target Start/End: Original strand, 25946073 - 25946119
Alignment:
Q  804 ttttggcatccttaaccggtgtctccgaggcaccggttaatatgaccc 851  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  25946073 ttttggcttccttaaccggtgtctccg-ggcaccggttaacatgaccc 25946119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 681 - 796
Target Start/End: Original strand, 11846086 - 11846202
Alignment:
Q  681 ggtgtctccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-g 778  Q
    |||||| ||||| |||||| |||||||   ||||| || || ||||| |||||| |||||||||| |||||||||||||   ||| |||||||||  | |    
T  11846086 ggtgtccccgggacactagctaaggatataaaaaaggaaattatatagtagttaatacattgaaa-ttgtgtaattaatttataataaagtcaaaagtag 11846184  T
Q  779 tttccttttatggtaata 796  Q
    ||||||||||||||||||    
T  11846185 tttccttttatggtaata 11846202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 5e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 699 - 820
Target Start/End: Original strand, 6819948 - 6820069
Alignment:
Q  699 gttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatact 798  Q
    |||||||||| |||||| || || ||| | ||||||||  || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |    
T  6819948 gttaaggatgttaaaaa-gaaattatacagtagttattgtatagaaaactgtgtaattaatactaaaaaagtcaaaaatgtttcattttatggtaataat 6820046  T
Q  799 tacc-tttttggcatccttaacc 820  Q
    |||| ||||| ||||||||||||    
T  6820047 taccttttttagcatccttaacc 6820069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 720 - 820
Target Start/End: Original strand, 34569376 - 34569476
Alignment:
Q  720 ataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatacttacc-tttttggcatccttaa 818  Q
    |||||| | ||||||||  |||||||||||||||||||||||||||||||||||| || |||| ||||||  ||||||||||| |||||||||| |||||    
T  34569376 ataatacagtagttattgtattgaaaattgtgtaattaatactaaaaaagtcaaa-atatttctttttattataatacttaccttttttggcatacttaa 34569474  T
Q  819 cc 820  Q
    ||    
T  34569475 cc 34569476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 706 - 774
Target Start/End: Complemental strand, 41468779 - 41468711
Alignment:
Q  706 atgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaa 774  Q
    |||||||||| || || ||||| || |||||||||||||||||||||||||||| || ||||| |||||    
T  41468779 atgctaaaaaggaaattatatagtaattattacattgaaaattgtgtaattaatccttaaaaaatcaaa 41468711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 812 - 849
Target Start/End: Complemental strand, 45996848 - 45996811
Alignment:
Q  812 tccttaaccggtgtctccgaggcaccggttaatatgac 849  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  45996848 tccttaaccggtgtctcggagacaccggttaatatgac 45996811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 723 - 806
Target Start/End: Original strand, 47839548 - 47839632
Alignment:
Q  723 atataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-gtttccttttatggtaatacttacctttt 806  Q
    |||||||||||| |||||||||| |||||||||||||   ||| ||||||||| |  ||||||||||||||||||| || ||||||    
T  47839548 atataatagttaatacattgaaa-ttgtgtaattaatttataataaagtcaaaaacagtttccttttatggtaataattccctttt 47839632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 7e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 710 - 796
Target Start/End: Original strand, 10431779 - 10431865
Alignment:
Q  710 taaaaaagagataatataatagttattacattgaaaattgtgtaattaatact-aaaaaagtcaaacatgtttccttttatggtaata 796  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||||| || |||||||||||| ||||||||| ||||| |||||    
T  10431779 taaaaaagaaattatataatagttattacattg-aaattgtgtaattaatgctaaaaaaagtcaaatatgtttcctattatgataata 10431865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 729 - 807
Target Start/End: Complemental strand, 8648097 - 8648019
Alignment:
Q  729 tagttattacattgaaaa-ttgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatacttaccttttt 807  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| || |||  ||||||||||||| || |||||||    
T  8648097 tagttattgcattgaaaaattgtgtaattaatactaaaaaagtcaaa-atattttattttatggtaataatttccttttt 8648019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 700 - 774
Target Start/End: Original strand, 11633951 - 11634026
Alignment:
Q  700 ttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaa 774  Q
    |||||||| |||||||||  || ||||| |||||||| |||||||||||||||||||||||| |||||| ||||||    
T  11633951 ttaaggatactaaaaaagtaattatatagtagttattgcattgaaaattgtgtaattaatacataaaaatgtcaaa 11634026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 700 - 774
Target Start/End: Complemental strand, 11616285 - 11616210
Alignment:
Q  700 ttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaa 774  Q
    |||||||| |||||||||  || ||||| |||||||| ||||||||||||| |||||||||| |||||| ||||||    
T  11616285 ttaaggatactaaaaaagtaattatatagtagttattgcattgaaaattgtataattaatacataaaaatgtcaaa 11616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 680 - 842
Target Start/End: Original strand, 23402151 - 23402315
Alignment:
Q  680 tggtgtctccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat- 777  Q
    ||||| |||||||||||| |||||||||   ||||| || || ||||| || ||| | |||||||| ||||| |||||||   ||| ||||||||| |      
T  23402151 tggtgcctccggggcactggttaaggatatgaaaaaggaaattatatagtaattaatgcattgaaa-ttgtgaaattaatttataataaagtcaaaaaca 23402249  T
Q  778 gtttccttttatggtaatacttacctttt-tggcatccttaaccggtgtctccgaggcaccggtta 842  Q
    ||||||||||||||||||| ||||||||| ||| || ||||||| ||| | | |||||||||||||    
T  23402250 gtttccttttatggtaataattaccttttatggtatgcttaacccgtgccccggaggcaccggtta 23402315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 679 - 759
Target Start/End: Complemental strand, 11115269 - 11115190
Alignment:
Q  679 atggtgtctccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaat 759  Q
    |||||||| ||| |||||| |||||||||   ||||| || || |||||||||||| ||||||| ||||||||||||||||    
T  11115269 atggtgtccccgaggcactggttaaggatataaaaaaggaaattatataatagttaatacattg-aaattgtgtaattaat 11115190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 667 - 759
Target Start/End: Original strand, 22021631 - 22021724
Alignment:
Q  667 gagaaatgttagatggtgtctccggggcactagttaaggatgct-aaaaaagagataatataatagttattacattgaaaattgtgtaattaat 759  Q
    |||||||||||   |||| | |||||||||||||||||| | || ||||||||  | ||||| || ||||| |||||||| |||||||||||||    
T  22021631 gagaaatgttaatcggtgcccccggggcactagttaaggttactaaaaaaagaatttatatagtaattattgcattgaaacttgtgtaattaat 22021724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 688 - 768
Target Start/End: Original strand, 15023464 - 15023543
Alignment:
Q  688 ccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaa 768  Q
    |||||||||| |||||||||||||||| | | || |||||||||||||| ||||||||| | |||||||||||||||||||    
T  15023464 ccggggcactggttaaggatgctaaaagaaa-attatataatagttattgcattgaaaactatgtaattaatactaaaaaa 15023543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 743 - 853
Target Start/End: Complemental strand, 5518994 - 5518884
Alignment:
Q  743 aaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatacttacctttttggcatccttaaccggtgtctccgaggcaccggtta 842  Q
    ||||||||||||||||| |  ||||||||||| || ||| |||||||||||||| ||  ||||||||||||||||||| ||| | | | ||||| |||||    
T  5518994 aaaattgtgtaattaatccacaaaaagtcaaaaatattttcttttatggtaataattttctttttggcatccttaacctgtgccccgggggcactggtta 5518895  T
Q  843 atatgacccat 853  Q
      |||||||||    
T  5518894 gcatgacccat 5518884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 695 - 807
Target Start/End: Original strand, 15601813 - 15601924
Alignment:
Q  695 actagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggta 793  Q
    |||||||||| ||||||||||||| | ||||||| ||||||||  ||  |||||||||||||||   || ||||  ||||| ||||||| ||||||||||    
T  15601813 actagttaagaatgctaaaaaagaaaataatatagtagttattgtataaaaaattgtgtaattat--cttaaaagatcaaaaatgtttctttttatggta 15601910  T
Q  794 atacttaccttttt 807  Q
    ||| ||||||||||    
T  15601911 atatttaccttttt 15601924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 686 - 759
Target Start/End: Complemental strand, 8749967 - 8749893
Alignment:
Q  686 ctccggggcactagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaat 759  Q
    |||||||||||| | ||||| | |||||||||| | |  ||||||| ||||||||||||||||||||||||||||    
T  8749967 ctccggggcactggctaaggttactaaaaaagaaaattttataataattattacattgaaaattgtgtaattaat 8749893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 699 - 807
Target Start/End: Complemental strand, 25107293 - 25107187
Alignment:
Q  699 gttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatact 798  Q
    ||||| ||||||||||| || || |||||||||| |||  |||||||||| |||||| |||||||||||| | ||| || ||| |||||||  ||||| |    
T  25107293 gttaaagatgctaaaaa-gaaattatataatagtcattgtattgaaaattatgtaataaatactaaaaaatttaaa-atattttcttttatattaataat 25107196  T
Q  799 taccttttt 807  Q
    |||||||||    
T  25107195 taccttttt 25107187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 710 - 826
Target Start/End: Original strand, 1414 - 1531
Alignment:
Q  710 taaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaa-aagtcaaacatgtttccttttatggtaatact-taccttttt 807  Q
    ||||||||| || |||||||||||||| ||||| ||||||||||||||||  ||||| ||  |||| ||||||||||||||||||||| | | | |||||    
T  1414 taaaaaagaaattatataatagttattgcattg-aaattgtgtaattaatgataaaagaaagcaaatatgtttccttttatggtaataatgtccgttttt 1512  T
Q  808 ggcatccttaaccggtgtc 826  Q
    |||||||| |||| |||||    
T  1513 ggcatcctaaaccagtgtc 1531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 688 - 826
Target Start/End: Complemental strand, 33899176 - 33899040
Alignment:
Q  688 ccggggcactagttaaggatgctaaaaaag-agataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttt 786  Q
    |||||||||| |||||| ||| |||||||| | || |||||||| |||||  ||||||||||||||||| | ||  |||||||||||| || |||| |||    
T  33899176 ccggggcactggttaagaatgataaaaaaggaaattatataataattattgaattgaaaattgtgtaat-atta--aaaaaagtcaaaaatatttctttt 33899080  T
Q  787 tatggtaatacttacctttttggcatccttaaccggtgtc 826  Q
    ||| |||||| || |||||||  ||||||||||| |||||    
T  33899079 tatagtaataatttcctttttttcatccttaaccagtgtc 33899040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 690 - 842
Target Start/End: Complemental strand, 16890643 - 16890489
Alignment:
Q  690 ggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-gtttcctttt 787  Q
    ||||||| ||||||||||   ||||| || || ||||| |||||| | |||||||| |||||||||||||   ||| ||||||||| |  ||||||||||    
T  16890643 ggggcaccagttaaggatatgaaaaaggaaattatatagtagttaatgcattgaaa-ttgtgtaattaattgataataaagtcaaaaacagtttcctttt 16890545  T
Q  788 atggtaatacttacctttt-tggcatccttaaccggtgtctccgaggcaccggtta 842  Q
    ||||||||| || | |||| ||| || ||||||||||| ||||| |||||||||||    
T  16890544 atggtaataattcctttttatggtatgcttaaccggtgcctccggggcaccggtta 16890489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 681 - 806
Target Start/End: Complemental strand, 27988671 - 27988545
Alignment:
Q  681 ggtgtctccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-g 778  Q
    |||| |||||||||||| |||||||||   ||||| || || |||||||||||| | |||||||| |||||||||||||   ||| ||||||||| |  |    
T  27988671 ggtgcctccggggcactggttaaggatatgaaaaaggaaattatataatagttaatgcattgaaa-ttgtgtaattaatttataataaagtcaaaaacag 27988573  T
Q  779 tttccttttatggtaatacttacctttt 806  Q
    |||||||||||||||||| || ||||||    
T  27988572 tttccttttatggtaataattccctttt 27988545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 681 - 806
Target Start/End: Complemental strand, 28045973 - 28045847
Alignment:
Q  681 ggtgtctccggggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-g 778  Q
    |||| |||||||||||| |||||||||   ||||| || || |||||||||||| | |||||||| |||||||||||||   ||| ||||||||| |  |    
T  28045973 ggtgcctccggggcactggttaaggatatgaaaaaggaaattatataatagttaatgcattgaaa-ttgtgtaattaatttataataaagtcaaaaacag 28045875  T
Q  779 tttccttttatggtaatacttacctttt 806  Q
    |||||||||||||||||| || ||||||    
T  28045874 tttccttttatggtaataattccctttt 28045847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 699 - 807
Target Start/End: Original strand, 31261547 - 31261651
Alignment:
Q  699 gttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaatact 798  Q
    ||||||||||||||||||| ||    ||  |||||||| ||||||||||||||||||||||| |||||  |||||| ||| ||  |||||| |||||| |    
T  31261547 gttaaggatgctaaaaaaggga----attgtagttattgcattgaaaattgtgtaattaatattaaaatggtcaaaaatgctttattttatagtaataat 31261642  T
Q  799 taccttttt 807  Q
    ||| |||||    
T  31261643 tacattttt 31261651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 693 - 759
Target Start/End: Complemental strand, 37714063 - 37713996
Alignment:
Q  693 gcactagttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaat 759  Q
    ||||||||||||||| |||||||||| | | | |||||||||||| ||||||||||| ||||||||||    
T  37714063 gcactagttaaggatactaaaaaagaaaattacataatagttattgcattgaaaattatgtaattaat 37713996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 699 - 759
Target Start/End: Complemental strand, 16196960 - 16196899
Alignment:
Q  699 gttaaggatgctaaaaaagaga-taatataatagttattacattgaaaattgtgtaattaat 759  Q
    ||||| ||| |||||||||| | | ||||||||||||||| |||||||||||||||||||||    
T  16196960 gttaaagatactaaaaaagaaaattatataatagttattatattgaaaattgtgtaattaat 16196899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 723 - 774
Target Start/End: Original strand, 42449021 - 42449072
Alignment:
Q  723 atataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaa 774  Q
    ||||| ||||||||||||||||||||||||| ||||| |  |||||||||||    
T  42449021 atatagtagttattacattgaaaattgtgtagttaatccataaaaagtcaaa 42449072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 699 - 807
Target Start/End: Complemental strand, 42433697 - 42433589
Alignment:
Q  699 gttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatactaaaaaagtcaaaca-tgtttccttttatggtaatac 797  Q
    |||||| || ||||||| || || |||||||||||| | ||||| ||||||||||||||||    ||||||||||| |  |||| ||||||||||||||     
T  42433697 gttaagcatactaaaaaggaaattatataatagttaatgcattg-aaattgtgtaattaatttataaaaagtcaaaaacagttttcttttatggtaataa 42433599  T
Q  798 ttaccttttt 807  Q
    || |||||||    
T  42433598 tttccttttt 42433589  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 695 - 759
Target Start/End: Original strand, 66426 - 66491
Alignment:
Q  695 actagttaaggatgctaaaaaa-gagataatataatagttattacattgaaaattgtgtaattaat 759  Q
    ||||||||||||| | |||||| ||  | |||||||||||||| ||||||||||||||||||||||    
T  66426 actagttaaggatacgaaaaaatgaagttatataatagttattgcattgaaaattgtgtaattaat 66491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 806
Target Start/End: Complemental strand, 17333444 - 17333328
Alignment:
Q  691 gggcactagttaaggatgctaaaaaagagataatataatagttattacattgaaaattgtgtaattaatac-taaaaaagtcaaacat-gtttcctttta 788  Q
    ||||||| |||||||||   ||||| || || ||||| |||||| | |||||||| ||||||||||||| | ||| ||||||||| |  |||||||||||    
T  17333444 gggcactggttaaggatatgaaaaaggaaattatatagtagttaatgcattgaaa-ttgtgtaattaattcataataaagtcaaaaacagtttcctttta 17333346  T
Q  789 tggtaatacttacctttt 806  Q
    || |||||||| ||||||    
T  17333345 tgataatacttccctttt 17333328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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