View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-INSERTION-4 (Length: 510)

Name: NF0235-INSERTION-4
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-INSERTION-4
NF0235-INSERTION-4
[»] chr4 (23 HSPs)
chr4 (221-423)||(11824545-11824747)
chr4 (8-165)||(11824803-11824960)
chr4 (442-497)||(43074615-43074670)
chr4 (442-496)||(23759560-23759614)
chr4 (442-496)||(35383764-35383818)
chr4 (442-492)||(51371728-51371778)
chr4 (441-493)||(11824462-11824514)
chr4 (441-492)||(35393934-35393985)
chr4 (441-496)||(53924745-53924800)
chr4 (446-496)||(14449276-14449326)
chr4 (443-496)||(50769622-50769675)
chr4 (443-496)||(2653953-2654006)
chr4 (440-493)||(6614844-6614897)
chr4 (442-491)||(53312551-53312600)
chr4 (442-506)||(29697772-29697836)
chr4 (443-494)||(14449548-14449599)
chr4 (460-495)||(27978958-27978993)
chr4 (460-490)||(16292534-16292564)
chr4 (442-496)||(19909172-19909226)
chr4 (441-494)||(1571669-1571722)
chr4 (463-492)||(35615433-35615462)
chr4 (454-490)||(4411493-4411529)
chr4 (441-493)||(30064364-30064416)
[»] chr7 (32 HSPs)
chr7 (8-165)||(32924462-32924619)
chr7 (274-422)||(32924075-32924223)
chr7 (8-165)||(32912489-32912646)
chr7 (277-384)||(32912151-32912258)
chr7 (446-496)||(20185176-20185226)
chr7 (442-496)||(28785755-28785809)
chr7 (441-496)||(23826283-23826338)
chr7 (442-496)||(4049982-4050036)
chr7 (442-496)||(17876418-17876472)
chr7 (443-489)||(21748082-21748128)
chr7 (442-496)||(28350115-28350169)
chr7 (8-98)||(32927271-32927361)
chr7 (441-506)||(19645052-19645117)
chr7 (298-363)||(32942791-32942856)
chr7 (298-363)||(32949972-32950037)
chr7 (445-497)||(8074135-8074187)
chr7 (442-494)||(14247293-14247345)
chr7 (441-496)||(21939335-21939390)
chr7 (441-496)||(45697485-45697540)
chr7 (442-496)||(11373846-11373900)
chr7 (8-98)||(32935533-32935623)
chr7 (442-491)||(15348224-15348273)
chr7 (441-494)||(18186437-18186490)
chr7 (463-496)||(24432978-24433011)
chr7 (443-492)||(36580274-36580323)
chr7 (463-506)||(3247422-3247465)
chr7 (8-98)||(32943015-32943105)
chr7 (463-496)||(6726520-6726553)
chr7 (442-491)||(18504505-18504554)
chr7 (443-496)||(20505270-20505323)
chr7 (463-496)||(28350403-28350436)
chr7 (442-491)||(29834175-29834224)
[»] chr2 (24 HSPs)
chr2 (441-506)||(14489461-14489526)
chr2 (441-497)||(5362173-5362229)
chr2 (441-496)||(6592993-6593048)
chr2 (443-496)||(16043286-16043339)
chr2 (443-496)||(34679351-34679404)
chr2 (443-496)||(39918434-39918487)
chr2 (446-494)||(37431800-37431848)
chr2 (443-494)||(18709247-18709298)
chr2 (441-496)||(19206140-19206195)
chr2 (441-496)||(32969788-32969843)
chr2 (445-494)||(4925706-4925755)
chr2 (446-510)||(6510245-6510310)
chr2 (441-490)||(34761127-34761176)
chr2 (446-487)||(35718925-35718966)
chr2 (446-494)||(2609081-2609129)
chr2 (441-496)||(14816058-14816113)
chr2 (442-496)||(21358366-21358420)
chr2 (442-496)||(25333753-25333807)
chr2 (443-496)||(15023099-15023152)
chr2 (443-488)||(31827800-31827845)
chr2 (443-496)||(36176981-36177034)
chr2 (442-494)||(34679096-34679148)
chr2 (442-506)||(36177341-36177405)
chr2 (443-491)||(37803398-37803446)
[»] chr1 (16 HSPs)
chr1 (442-495)||(39642199-39642252)
chr1 (445-494)||(18632602-18632651)
chr1 (441-506)||(25085397-25085462)
chr1 (441-490)||(25486479-25486528)
chr1 (443-494)||(14979063-14979114)
chr1 (445-496)||(23891662-23891713)
chr1 (444-496)||(42924329-42924381)
chr1 (446-494)||(45739196-45739244)
chr1 (441-492)||(23220826-23220877)
chr1 (442-496)||(3377500-3377554)
chr1 (446-492)||(46912193-46912239)
chr1 (443-496)||(3377772-3377825)
chr1 (467-496)||(5287274-5287303)
chr1 (446-506)||(16874511-16874571)
chr1 (444-496)||(37008218-37008270)
chr1 (461-497)||(41997658-41997694)
[»] chr5 (20 HSPs)
chr5 (441-496)||(2974895-2974950)
chr5 (442-506)||(20512450-20512514)
chr5 (446-496)||(3999089-3999139)
chr5 (444-493)||(39574240-39574289)
chr5 (444-496)||(32391720-32391772)
chr5 (441-492)||(35166557-35166609)
chr5 (441-496)||(12406039-12406094)
chr5 (442-496)||(16132991-16133045)
chr5 (445-495)||(25910987-25911037)
chr5 (446-491)||(3333695-3333740)
chr5 (443-496)||(3333962-3334015)
chr5 (441-496)||(6464336-6464391)
chr5 (442-493)||(24405761-24405812)
chr5 (442-496)||(18403251-18403304)
chr5 (446-496)||(25364086-25364136)
chr5 (444-506)||(35877530-35877592)
chr5 (442-492)||(36798441-36798491)
chr5 (441-490)||(20629734-20629783)
chr5 (439-496)||(34319956-34320012)
chr5 (446-491)||(43098031-43098076)
[»] chr8 (19 HSPs)
chr8 (442-496)||(17070906-17070960)
chr8 (442-496)||(17577312-17577366)
chr8 (441-496)||(6807171-6807226)
chr8 (441-496)||(28349568-28349623)
chr8 (448-496)||(22192307-22192355)
chr8 (444-496)||(33298594-33298646)
chr8 (441-496)||(39889770-39889825)
chr8 (442-496)||(37813161-37813215)
chr8 (442-496)||(41487199-41487253)
chr8 (443-496)||(9762460-9762513)
chr8 (442-490)||(521709-521757)
chr8 (460-496)||(14880595-14880631)
chr8 (441-492)||(16982624-16982675)
chr8 (441-496)||(20853376-20853431)
chr8 (441-492)||(23702121-23702172)
chr8 (461-496)||(27545616-27545651)
chr8 (441-506)||(25144191-25144256)
chr8 (446-491)||(37263361-37263406)
chr8 (463-491)||(26824098-26824126)
[»] chr6 (10 HSPs)
chr6 (442-496)||(12766475-12766529)
chr6 (441-496)||(3579593-3579648)
chr6 (441-491)||(238928-238978)
chr6 (454-506)||(1377457-1377509)
chr6 (454-506)||(1385205-1385257)
chr6 (445-491)||(28011390-28011436)
chr6 (462-494)||(18030956-18030988)
chr6 (443-493)||(33401317-33401367)
chr6 (443-496)||(6036644-6036697)
chr6 (443-491)||(5003089-5003137)
[»] chr3 (32 HSPs)
chr3 (441-496)||(86825-86880)
chr3 (442-493)||(17773169-17773220)
chr3 (442-493)||(19074470-19074521)
chr3 (441-496)||(28204478-28204533)
chr3 (442-492)||(14340732-14340782)
chr3 (441-490)||(14349375-14349424)
chr3 (443-491)||(14856546-14856594)
chr3 (441-505)||(35359236-35359300)
chr3 (441-493)||(36677522-36677574)
chr3 (441-493)||(36687604-36687656)
chr3 (441-496)||(3193042-3193097)
chr3 (441-496)||(46226948-46227003)
chr3 (445-492)||(48348257-48348304)
chr3 (441-496)||(51315745-51315800)
chr3 (442-496)||(28712722-28712776)
chr3 (441-491)||(38958109-38958159)
chr3 (443-496)||(33329611-33329664)
chr3 (442-491)||(54718993-54719042)
chr3 (443-490)||(1814550-1814597)
chr3 (441-496)||(4474328-4474383)
chr3 (444-495)||(19404399-19404450)
chr3 (443-506)||(52008497-52008560)
chr3 (443-490)||(53184784-53184831)
chr3 (442-496)||(12759502-12759556)
chr3 (442-492)||(20432189-20432239)
chr3 (446-496)||(44586047-44586097)
chr3 (442-496)||(54464425-54464478)
chr3 (444-489)||(27178141-27178186)
chr3 (441-494)||(28944228-28944281)
chr3 (450-506)||(578421-578477)
chr3 (446-494)||(25248948-25248996)
chr3 (444-496)||(47189599-47189651)
[»] scaffold0062 (1 HSPs)
scaffold0062 (442-490)||(46075-46123)
[»] scaffold0025 (1 HSPs)
scaffold0025 (441-489)||(19038-19086)
[»] scaffold1458 (1 HSPs)
scaffold1458 (441-496)||(1469-1524)
[»] scaffold0515 (1 HSPs)
scaffold0515 (441-496)||(3637-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (441-496)||(3637-3692)
[»] scaffold0735 (1 HSPs)
scaffold0735 (444-496)||(6061-6113)
[»] scaffold0417 (1 HSPs)
scaffold0417 (441-491)||(9603-9653)
[»] scaffold0248 (1 HSPs)
scaffold0248 (444-496)||(671-723)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 221 - 423
Target Start/End: Complemental strand, 11824747 - 11824545
Alignment:
Q  221 ctcggtatctgacctaacgatttagtcaacataatctcttaacttgttaaaataataacttgtacttaccatcaaatccagctaaaatgcaagggttagg 320  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  11824747 ctcggtatctgacctaactatttagtcaacataatctcttaacttgttaaaataagaacttgtatttaccatcaaatccagctaaaatgcaagggttagg 11824648  T
Q  321 agaattatgagtgaccttcaaaatctcagcccgagatgcttctgtaccaaagtgtaagtaactgggagaaagaagttaagagctcttaaaatattaggca 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11824647 agaattatgagtgaccttcaaaatctcagcccgagatgcttctgtaccaaagtgtaagtaactggaagaaagaagttaagagctcttaaaatattaggca 11824548  T
Q  421 tgg 423  Q
    |||    
T  11824547 tgg 11824545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 11824960 - 11824803
Alignment:
Q  8 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcattttttaaaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11824960 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcattttttaaaac 11824861  T
Q  108 tggctccagaagctggggcattggccttaaactcttctccagcatatctgtatgtccc 165  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  11824860 tggctccagaagctagggcattggccttaaattcttctccagcatatctgtatgtccc 11824803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 442 - 497
Target Start/End: Original strand, 43074615 - 43074670
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccca 497  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  43074615 aggcttaatagcaattttcgccccctaactttcacgaagttgcgattttggcccca 43074670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 23759560 - 23759614
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  23759560 aggcttaatagtagttttcgccccctaactttcataaagttgcgattttggcccc 23759614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 35383764 - 35383818
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  35383764 aggcttaatagcagttttcgccccctaactttcacgaagttgtgattttggcccc 35383818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 492
Target Start/End: Complemental strand, 51371778 - 51371728
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  51371778 aggcttaatagtagttttcgccccctaactttctcgaagttgcgattttgg 51371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 493
Target Start/End: Complemental strand, 11824514 - 11824462
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  11824514 taggcttaataacagtttccgccccctaacttttacgaagttgcgattttggc 11824462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 35393985 - 35393934
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  35393985 taggcttaatagcagttttcaccccctaactttcacgaagttgcgattttgg 35393934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 53924745 - 53924800
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||    
T  53924745 taggcttaatagtagttctcgccccctaactttcacgaagttgtgattttgacccc 53924800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 14449276 - 14449326
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  14449276 ttaatagcagttttcgccccctaactttcacgaagttgagattttggcccc 14449326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 50769675 - 50769622
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||    
T  50769675 ggcttaaaagcagttttcgccccctaacttttacgaagttgcgattttggcccc 50769622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 2653953 - 2654006
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| |||||  ||| ||||||||| ||||||||||||||||||||||    
T  2653953 ggcttaatagcagtttttgcctcctaacttttacgaagttgcgattttggcccc 2654006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 6614844 - 6614897
Alignment:
Q  440 gtaggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    ||||||||||||| | ||| || ||| |||||||||||||||||||||||||||    
T  6614844 gtaggcttaatagcatttttcgacccttaactttcacgaagttgcgattttggc 6614897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 53312600 - 53312551
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||||||  ||||| | ||||||||||||||||||||||||||||||    
T  53312600 aggcttaataacagttttcaccccctaactttcacgaagttgcgattttg 53312551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 29697836 - 29697772
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||||||||| ||||| | || ||||||||||| |||||||||||||||| |||  ||||||||    
T  29697836 aggcttaatagcagttttcacctcctaactttcatgaagttgcgattttggtccctaagaaaaaa 29697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 14449599 - 14449548
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    ||||||||||||||||  |||||||||||||  | |||||||||||||||||    
T  14449599 ggcttaatagtagttttagccccctaacttttccaaagttgcgattttggcc 14449548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Complemental strand, 27978993 - 27978958
Alignment:
Q  460 cgccccctaactttcacgaagttgcgattttggccc 495  Q
    |||||||||||||| |||||||||||||||||||||    
T  27978993 cgccccctaactttaacgaagttgcgattttggccc 27978958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 490
Target Start/End: Complemental strand, 16292564 - 16292534
Alignment:
Q  460 cgccccctaactttcacgaagttgcgatttt 490  Q
    |||||||||||||||||||||||||||||||    
T  16292564 cgccccctaactttcacgaagttgcgatttt 16292534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 19909172 - 19909226
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| |||||   ||||||||||||| | |||||||||||||||||||    
T  19909172 aggcttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccc 19909226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 1571722 - 1571669
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||||||  ||||| | |  ||||||||||||||||||||||||||||||    
T  1571722 taggcttaataacagttttcacgtcctaactttcacgaagttgcgattttggcc 1571669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 35615462 - 35615433
Alignment:
Q  463 cccctaactttcacgaagttgcgattttgg 492  Q
    ||||||||||||||||||||||||||||||    
T  35615462 cccctaactttcacgaagttgcgattttgg 35615433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 4411529 - 4411493
Alignment:
Q  454 agtttccgccccctaactttcacgaagttgcgatttt 490  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  4411529 agttttcgccccctaattttcacgaagttgcgatttt 4411493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 493
Target Start/End: Complemental strand, 30064416 - 30064364
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    ||||||||||||||||||  || |||||| ||| | |||||||||||||||||    
T  30064416 taggcttaatagtagttttggctccctaagttttaagaagttgcgattttggc 30064364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 32924619 - 32924462
Alignment:
Q  8 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcattttttaaaac 107  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||     
T  32924619 cctccaccactccaaattccaccaaaagtgcaattctgatagggacatggataattcaatttaagagcctcacgaactatctttttgcattttttaaaat 32924520  T
Q  108 tggctccagaagctggggcattggccttaaactcttctccagcatatctgtatgtccc 165  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  32924519 tggctccagaagcaggggcattggccttaaattcttctccagcatatgtgtatgtccc 32924462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 274 - 422
Target Start/End: Complemental strand, 32924223 - 32924075
Alignment:
Q  274 aataacttgtacttaccatcaaatccagctaaaatgcaagggttaggagaattatgagtgaccttcaaaatctcagcccgagatgcttctgtaccaaagt 373  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  32924223 aataacttgtgtttaccatcaaatccagctaaaatgcaagggttgggagaattatgtgtgaccttcaaaatctctgctcgagatgcttctctaccaaagt 32924124  T
Q  374 gtaagtaactgggagaaagaagttaagagctcttaaaatattaggcatg 422  Q
    |||||||||||| ||| |||| |||| ||| ||||| ||||||||||||    
T  32924123 gtaagtaactggcagacagaaattaaaagcccttaatatattaggcatg 32924075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 32912646 - 32912489
Alignment:
Q  8 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcattttttaaaac 107  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||| | ||| |||||||||||||   ||||||     
T  32912646 cctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaaat 32912547  T
Q  108 tggctccagaagctggggcattggccttaaactcttctccagcatatctgtatgtccc 165  Q
    | || |||||||| ||||| |||||||||||||| |||||||||||| |||| |||||    
T  32912546 tagccccagaagcaggggctttggccttaaactcctctccagcatatgtgtaggtccc 32912489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 32912258 - 32912151
Alignment:
Q  277 aacttgtacttaccatcaaatccagctaaaatgcaagggttaggagaattatgagtgaccttcaaaatctcagcccgagatgcttctgtaccaaagtgta 376  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||| || |||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  32912258 aacttgtgtttaccatcaaatccagctaaaaggcaagggttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgta 32912159  T
Q  377 agtaactg 384  Q
    ||||||||    
T  32912158 agtaactg 32912151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 20185226 - 20185176
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  20185226 ttaatagtagttttcgccccctaactttcacgaagttgcgattttgacccc 20185176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 28785755 - 28785809
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  28785755 aggcataatagcagtttccgccccctaactttcacgaagttacgattttggcccc 28785809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 23826338 - 23826283
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  | ||||||||||||||||||||||||||||||||||    
T  23826338 taggcttaatagcagtttttgtcccctaactttcacgaagttgcgattttggcccc 23826283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 4050036 - 4049982
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||    
T  4050036 aggcttaatagcagttttcgccccttaactttcacgaagttgtgattttggcccc 4049982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 17876472 - 17876418
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||    
T  17876472 aggcttaatagcagttttcaccccctaactttcacgaagttacgattttggcccc 17876418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 21748128 - 21748082
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattt 489  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21748128 ggcttaatagcagttttcgccccctaactttcacgaagttgcgattt 21748082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 28350115 - 28350169
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| |||||  |||||||||||||||||||||| |||||||||||||    
T  28350115 aggcttaatagcagttttagccccctaactttcacgaagttacgattttggcccc 28350169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 32927361 - 32927271
Alignment:
Q  8 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcatt 98  Q
    |||||||||||||| || ||||||||||||||||||  ||| |||||||||| ||||| ||||||| ||| | ||  ||||| ||||||||    
T  32927361 cctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcatt 32927271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 506
Target Start/End: Complemental strand, 19645117 - 19645052
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    |||| ||||||| | ||| |||||| ||||||||||||||||||||||||||||||  ||||||||    
T  19645117 taggtttaatagcaattttcgccccttaactttcacgaagttgcgattttggcccctaagaaaaaa 19645052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 32942856 - 32942791
Alignment:
Q  298 ccagctaaaatgcaagggttaggagaattatgagtgaccttcaaaatctcagcccgagatgcttct 363  Q
    ||||||||||||||||| |||||||||  || |||||| |||||||| ||||| ||||||||||||    
T  32942856 ccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct 32942791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 32950037 - 32949972
Alignment:
Q  298 ccagctaaaatgcaagggttaggagaattatgagtgaccttcaaaatctcagcccgagatgcttct 363  Q
    ||||||||||||||||| |||||||||  || |||||| |||||||| ||||| ||||||||||||    
T  32950037 ccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct 32949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 8074187 - 8074135
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccca 497  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||    
T  8074187 cttaatagcagttttcgccccctaactttcacgaagttacgattttagcccca 8074135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 494
Target Start/End: Original strand, 14247293 - 14247345
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    ||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  14247293 aggcttaatagcagttttcgccacctaactttcacgaagttgtgattttggcc 14247345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 21939390 - 21939335
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  ||||||||| | ||||||||||||||||||||||||    
T  21939390 taggcttaatagcagttttggccccctaagtatcacgaagttgcgattttggcccc 21939335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 45697485 - 45697540
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||  ||||| || |||||||||||| |||||||||||||||||||||    
T  45697485 taggcttaataacagttttcgtcccctaactttctcgaagttgcgattttggcccc 45697540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 11373846 - 11373900
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||    
T  11373846 aggcttaatagcagttttcgccccctaacttttacgaagttgcgatcttgacccc 11373900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 32935623 - 32935533
Alignment:
Q  8 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcatt 98  Q
    |||||||||||||| |||||||  ||||||||| ||  ||| |||||||||| ||||| ||||||| ||| | ||| ||||| ||||||||    
T  32935623 cctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcatt 32935533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 15348273 - 15348224
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||||||    
T  15348273 aggcttaatagcagtattcaccccctaactttcacgaagttgcgattttg 15348224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 18186437 - 18186490
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||| |||||||| |||| |||||||||||||| | ||||||||||||||||||    
T  18186437 taggtttaatagtggttttcgccccctaacttttatgaagttgcgattttggcc 18186490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 24432978 - 24433011
Alignment:
Q  463 cccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||||||||||||||||||||    
T  24432978 cccctaactttcacgaagttgcgattttggcccc 24433011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 36580274 - 36580323
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    |||||||||| ||||| || ||||||||||||||||||||| ||||||||    
T  36580274 ggcttaatagcagttttcggcccctaactttcacgaagttgtgattttgg 36580323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 3247465 - 3247422
Alignment:
Q  463 cccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||    
T  3247465 cccctaactttcacgaagttgtgattttggccccataaaaaaaa 3247422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 32943105 - 32943015
Alignment:
Q  8 cctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcatt 98  Q
    |||||||| ||||| || ||||||||| | || |||  |||||||||||||| ||||| |||||| |||| | ||| ||||| ||||||||    
T  32943105 cctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcatt 32943015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 6726553 - 6726520
Alignment:
Q  463 cccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||||||||||||| ||||||    
T  6726553 cccctaactttcacgaagttgcgatttaggcccc 6726520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 18504554 - 18504505
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||||||  ||||| || ||||||||||||| |||||||||||||||    
T  18504554 aggcttaataacagttttcgtcccctaactttcatgaagttgcgattttg 18504505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 20505323 - 20505270
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| ||||| | ||||||| |||| | ||||||||||||||||||||    
T  20505323 ggcttaatagcagttttcaccccctagcttttatgaagttgcgattttggcccc 20505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 28350436 - 28350403
Alignment:
Q  463 cccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||||||||||||||| |||||||||    
T  28350436 cccctaactttcacgaagttgcgactttggcccc 28350403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 29834175 - 29834224
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||||||||||||| |||| | ||||| | |||||||||||||||||    
T  29834175 aggcttaatagtagttttcgcctcttaactgttacgaagttgcgattttg 29834224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 441 - 506
Target Start/End: Complemental strand, 14489526 - 14489461
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  14489526 taggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggcccctaagaaaaaa 14489461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 5362173 - 5362229
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccca 497  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  5362173 taggcttaatagtaattttcgccccctaactttcacaaagttgcgattttggcccca 5362229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 6593048 - 6592993
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||    
T  6593048 taggcttaacagtagttttcgccacctaactttcacgaagttgcgattttagcccc 6592993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 16043339 - 16043286
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| || ||||| ||||||||||||||||||||||| |||||||||||||    
T  16043339 ggcttaacagcagttttcgccccctaactttcacgaagttacgattttggcccc 16043286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 34679404 - 34679351
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| |||||  ||||||||||||||||||||||| ||||||||||||    
T  34679404 ggcttaatagcagtttttgccccctaactttcacgaagttgtgattttggcccc 34679351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 39918434 - 39918487
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||  |||||||||||||| | |||||||||||||||||||    
T  39918434 ggcttaatagtagttttagccccctaactttctcaaagttgcgattttggcccc 39918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 37431848 - 37431800
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  37431848 ttaatagcagttttcgccccctaacttccacgaagttgcgattttggcc 37431800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 494
Target Start/End: Original strand, 18709247 - 18709298
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||||| ||||| || |||||||||||||||||||| |||||||||||    
T  18709247 ggcttaatagcagttttcgtcccctaactttcacgaagtttcgattttggcc 18709298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 19206140 - 19206195
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| | ||| |||||||||| |||||| |||||||||||||||||||    
T  19206140 taggcttaatagcaattttcgccccctaattttcacaaagttgcgattttggcccc 19206195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 32969843 - 32969788
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| ||||| |||||||||||||||||| |||| ||||||| |||||    
T  32969843 taggcttaatagcagttttcgccccctaactttcacggagtttcgattttagcccc 32969788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 4925755 - 4925706
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||||||    
T  4925755 cttaatagtaatttttgtcccctaactttcacgaagttgcgattttggcc 4925706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 446 - 510
Target Start/End: Complemental strand, 6510310 - 6510245
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggc-cccacagaaaaaagcta 510  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||||||| |||  ||||||||||||    
T  6510310 ttaatagcagttttcgccctctaactttcatgaagttgcgattttggcaccctaagaaaaaagcta 6510245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 34761176 - 34761127
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    |||| ||||||| ||||| || ||||||||||||||||||||||||||||    
T  34761176 taggtttaatagcagttttcgtcccctaactttcacgaagttgcgatttt 34761127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 446 - 487
Target Start/End: Complemental strand, 35718966 - 35718925
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgat 487  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  35718966 ttaatagcagtttccgcctcctaactttcacgaagttgcgat 35718925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 2609081 - 2609129
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    ||||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  2609081 ttaatagtagttttcgccccctaacttttacgaagttttgattttggcc 2609129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 14816113 - 14816058
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  ||||||||  ||||| ||||||||||||||||||||    
T  14816113 taggcttaatagcagttttggccccctatgtttcaagaagttgcgattttggcccc 14816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 21358420 - 21358366
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| |||||  |||||||||||||| | |||||| ||||||||||||    
T  21358420 aggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggcccc 21358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 25333807 - 25333753
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| |||||| ||||| |||||||| ||||| ||||||||||| ||||    
T  25333807 aggcttaataatagttttcgccctctaactttaacgaaattgcgattttgacccc 25333753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 15023152 - 15023099
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| |||||  ||||||||||||||| ||||||| ||||||| ||||    
T  15023152 ggcttaatagcagttttggccccctaactttcaagaagttgtgattttgacccc 15023099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 31827845 - 31827800
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgatt 488  Q
    |||||||||| | ||| |||||||||||||| ||||||||||||||    
T  31827845 ggcttaatagcaattttcgccccctaacttttacgaagttgcgatt 31827800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 36176981 - 36177034
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| |||||  |||| |||| |||||||||||||||||||| |||||    
T  36176981 ggcttaatagcagttttagccctctaagtttcacgaagttgcgattttagcccc 36177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 494
Target Start/End: Original strand, 34679096 - 34679148
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    ||||||||||| |||||  |||||||||||||  | |||||||||||||||||    
T  34679096 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 34679148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 36177405 - 36177341
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||||||||  |||||  ||||| ||| ||||| ||||||||||||||||||||  ||||||||    
T  36177405 aggcttaataacagttttagccccttaagtttcaagaagttgcgattttggcccctaagaaaaaa 36177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 37803446 - 37803398
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||||||||  | ||| |||||||||||||| |||||||||||||||||    
T  37803446 ggcttaataacaattttcgccccctaacttttacgaagttgcgattttg 37803398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 442 - 495
Target Start/End: Original strand, 39642199 - 39642252
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccc 495  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  39642199 aggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggccc 39642252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 18632651 - 18632602
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  18632651 cttaatagcagttttcgccccctaacttttacgaagttgcgattttggcc 18632602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 25085397 - 25085462
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    |||||||||||| ||||| ||||||||||||||||  |||||||||||||| ||||  ||||||||    
T  25085397 taggcttaatagcagttttcgccccctaactttcataaagttgcgattttgacccctaagaaaaaa 25085462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 25486528 - 25486479
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  25486528 taggcttaatagcagtttttgccccctaactttcacgaagttgcgatttt 25486479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 14979114 - 14979063
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||||| ||||| |||||||||||||||| |||||||| |||||||||    
T  14979114 ggcttaatagaagttttcgccccctaactttcatgaagttgcaattttggcc 14979063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 23891662 - 23891713
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||| ||||| ||| |||||||||||||||||||| ||||||||||||    
T  23891662 cttaatagcagttttcgctccctaactttcacgaagttgtgattttggcccc 23891713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 42924329 - 42924381
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||||||  |||| |||||||||||||||||| ||||||| ||||    
T  42924329 gcttaatagtagtttttgccctctaactttcacgaagttgtgattttgacccc 42924381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 45739244 - 45739196
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    ||||||||||||| || ||  ||||||||||||||||||||||||||||    
T  45739244 ttaatagtagttttcgtcctttaactttcacgaagttgcgattttggcc 45739196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 23220877 - 23220826
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||| |||| ||||| |||||||||||||| |||||||| |||||||||    
T  23220877 taggcttgatagcagttttcgccccctaacttttacgaagttacgattttgg 23220826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 3377500 - 3377554
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| |||||  |||||||||||||  | |||||||||||||||||||    
T  3377500 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggcccc 3377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 46912193 - 46912239
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||| ||||| ||| || ||||||||||||||||||||||||||    
T  46912193 ttaatagcagttttcgctccttaactttcacgaagttgcgattttgg 46912239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 3377825 - 3377772
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| |||||  |||||||||||||| | |||||| ||||||||||||    
T  3377825 ggcttaatagcagttttagccccctaactttcccaaagttgtgattttggcccc 3377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 5287274 - 5287303
Alignment:
Q  467 taactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||||||||||||||||    
T  5287274 taactttcacgaagttgcgattttggcccc 5287303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 506
Target Start/End: Original strand, 16874511 - 16874571
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||||| | ||| |||||||||||||| |||||||||||||| || ||||  ||||||||    
T  16874511 ttaatagcaattttcgccccctaacttttacgaagttgcgattatgacccctaagaaaaaa 16874571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 37008218 - 37008270
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||| |||||  ||||||||  ||||| ||||||||||||||||||||    
T  37008218 gcttaatagcagttttggccccctatgtttcaagaagttgcgattttggcccc 37008270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 41997658 - 41997694
Alignment:
Q  461 gccccctaactttcacgaagttgcgattttggcccca 497  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  41997658 gccccctaattttcacaaagttgcgattttggcccca 41997694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 2974950 - 2974895
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  2974950 taggcttaatagcagtttttgccccctaactttcacgaagttgcgattttggcccc 2974895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 20512514 - 20512450
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||  ||||||||    
T  20512514 aggcttaatagcagttttcgcctcttaactttcacgaagttgcgattttggcccctaagaaaaaa 20512450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 3999089 - 3999139
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  3999089 ttaatagcagttttcgccccctaactttcacgaagttgcgattttgacccc 3999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 39574240 - 39574289
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  39574240 gcttaatagcagttttcgccctctaactttcacgaagttgcgattttggc 39574289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 32391720 - 32391772
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||    
T  32391720 gcttaatagcagttttcgccccttaactttcacgaagttgtgattttggcccc 32391772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 35166609 - 35166557
Alignment:
Q  441 taggcttaatagtagtttccgccccc-taactttcacgaagttgcgattttgg 492  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  35166609 taggcttaatagcagttttcgcccccctaactttcacgaagttgcgattttgg 35166557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 12406039 - 12406094
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  |||||||||||||| | |||||||||||||||||||    
T  12406039 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 12406094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 16133045 - 16132991
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||| |||| || ||||||||||||||||||||||| |||||    
T  16133045 aggcttaatagtggttttcgcctcccaactttcacgaagttgcgattttagcccc 16132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 495
Target Start/End: Complemental strand, 25911037 - 25910987
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttggccc 495  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||| ||||    
T  25911037 cttaatagcagttttcgccccctaactttcacgaagttgagattttagccc 25910987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 3333695 - 3333740
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||    
T  3333695 ttaatagcagttttcgccccctaactttcatgaagttgcgattttg 3333740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 3334015 - 3333962
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||  |||||||||||||  | |||||||||||||||||||    
T  3334015 ggcttaatagtagttttagccccctaacttttccaaagttgcgattttggcccc 3333962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 6464391 - 6464336
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  ||||||||  ||||| ||||||||||||||||||||    
T  6464391 taggcttaatagcagttttggccccctatgtttcaagaagttgcgattttggcccc 6464336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Complemental strand, 24405812 - 24405761
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    ||||||||||| ||||||||| |||||||  ||||||| |||||||||||||    
T  24405812 aggcttaatagcagtttccgcaccctaacaatcacgaacttgcgattttggc 24405761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 18403304 - 18403251
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||| ||||||||||| | ||||||||||||||||||    
T  18403304 aggcttaatagcagttttcgccacctaactttcatg-agttgcgattttggcccc 18403251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 25364136 - 25364086
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| ||||| | ||| ||||||||||||||||||| |||||||||||    
T  25364136 ttaatagcagttttcaccctctaactttcacgaagttgcaattttggcccc 25364086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 35877592 - 35877530
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||||||| ||||| | ||||||||||||||||| ||||| |||||| ||||  ||||||||    
T  35877592 gcttaatagcagttttcaccccctaactttcacgaggttgcaattttgacccctaagaaaaaa 35877530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 492
Target Start/End: Complemental strand, 36798491 - 36798441
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||||||| |||||  |||||||||||||| | |||||||||||||||    
T  36798491 aggcttaatagcagttttagccccctaactttctcaaagttgcgattttgg 36798441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 20629734 - 20629783
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    |||| ||||||| ||||| |||||| |||||||||| |||||||||||||    
T  20629734 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 20629783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 496
Target Start/End: Original strand, 34319956 - 34320012
Alignment:
Q  439 tgtaggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| |||||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  34319956 tgtaggcataatagcagttttcgcccc-taactttcttgaagttgcgattttggcccc 34320012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 43098031 - 43098076
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||| ||||| || ||||||||||| |||||||||||||||||    
T  43098031 ttaatagcagttttcgtcccctaacttttacgaagttgcgattttg 43098076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 17070906 - 17070960
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  17070906 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 17070960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 17577366 - 17577312
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  17577366 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 17577312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 6807171 - 6807226
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||||  ||||| |||||||| |||||||||||||||||||||    
T  6807171 taggcttaatagtagtttttgccccataactttctcgaagttgcgattttggcccc 6807226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 28349623 - 28349568
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||||  |||||||||||||| | |||||||||||||||||||    
T  28349623 taggcttaatagtagttttagccccctaactttcccaaagttgcgattttggcccc 28349568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 22192307 - 22192355
Alignment:
Q  448 aatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  22192307 aatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 22192355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 33298646 - 33298594
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||| |||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  33298646 gcttgatagcagttttcgcctcctaactttcacgaagttgcgattttggcccc 33298594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 39889770 - 39889825
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| ||||| |||| | |||||||||||||||||| |||||||||||    
T  39889770 taggcttaatagcagttttcgcctcttaactttcacgaagttgcaattttggcccc 39889825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 37813161 - 37813215
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| ||||||||||||||||| || || |||||||||||||    
T  37813161 aggcttaatagcagttttcgccccctaactttcacaaatttacgattttggcccc 37813215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 41487199 - 41487253
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| ||||||| || ||||||||||||||||||||| ||||    
T  41487199 aggcttaatagcagttttcgcccccgaattttcacgaagttgcgattttgacccc 41487253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 9762513 - 9762460
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| | ||| |||| ||||||||| ||||||||||||||||||||||    
T  9762513 ggcttaatagcaattttcgccacctaacttttacgaagttgcgattttggcccc 9762460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 490
Target Start/End: Complemental strand, 521757 - 521709
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    ||||||||||| ||||| | |||||||| ||||||||||||||||||||    
T  521757 aggcttaatagcagttttcaccccctaattttcacgaagttgcgatttt 521709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 14880631 - 14880595
Alignment:
Q  460 cgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||||||||||||||||| |||||||||||    
T  14880631 cgccccctaactttcacgaagttgcaattttggcccc 14880595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 16982624 - 16982675
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||| |||| ||||| | ||||||||||||||||||||||| |||||||    
T  16982624 taggcttgatagcagttttcaccccctaactttcacgaagttgcaattttgg 16982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 20853376 - 20853431
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  ||||||||||||||  ||||||||||||||| ||||    
T  20853376 taggcttaatagcagttttagccccctaactttcttgaagttgcgattttgacccc 20853431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 23702121 - 23702172
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    |||||||||||| ||||| |||||| |||||||||| ||||| |||||||||    
T  23702121 taggcttaatagcagttttcgccccttaactttcacaaagttacgattttgg 23702172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 496
Target Start/End: Complemental strand, 27545651 - 27545616
Alignment:
Q  461 gccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27545651 gccccctaactatcacgaagttgcgattttggcccc 27545616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 506
Target Start/End: Complemental strand, 25144256 - 25144191
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    |||| ||||||| | ||| |||| |||||| ||||||||||||||||||| |||||  ||||||||    
T  25144256 taggtttaatagcaattttcgcctcctaacattcacgaagttgcgattttagcccctaagaaaaaa 25144191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 37263361 - 37263406
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  37263361 ttaatagcagttttcgccccttaacttttacgaagttgcgattttg 37263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 491
Target Start/End: Complemental strand, 26824126 - 26824098
Alignment:
Q  463 cccctaactttcacgaagttgcgattttg 491  Q
    |||||||||||||||||||||||||||||    
T  26824126 cccctaactttcacgaagttgcgattttg 26824098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 12766529 - 12766475
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  12766529 aggcttaatagcagttttcaccccctaactttcacgaagttgcgattttggcccc 12766475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 3579593 - 3579648
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||    
T  3579593 taggcttaatagcagttttcgtcccttaactttcacgaagttgcgattttggcccc 3579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 238928 - 238978
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  238928 taggcttaatagcagttttcgccccctaattttcacgaagttgcgattttg 238978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 1377509 - 1377457
Alignment:
Q  454 agtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||| || ||||||||||||||||||||||||||||||||||  ||||||||    
T  1377509 agttttcgtcccctaactttcacgaagttgcgattttggcccctaagaaaaaa 1377457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 1385257 - 1385205
Alignment:
Q  454 agtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||| || ||||||||||||||||||||||||||||||||||  ||||||||    
T  1385257 agttttcgtcccctaactttcacgaagttgcgattttggcccctaagaaaaaa 1385205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 491
Target Start/End: Complemental strand, 28011436 - 28011390
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||||    
T  28011436 cttaatagcagttttcaccccctaactttcacgaagttgcgattttg 28011390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 18030956 - 18030988
Alignment:
Q  462 ccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||||||||||||||||||||||||||||    
T  18030956 ccccctaactttcacgaagttgcgattttggcc 18030988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 33401367 - 33401317
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    |||||||||| ||||| | |||||||||||| |||||||| ||||||||||    
T  33401367 ggcttaatagcagttttcaccccctaacttttacgaagttacgattttggc 33401317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 6036644 - 6036697
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| ||||| ||||| | ||||| |||||||||||||||||| ||||    
T  6036644 ggcttaatagcagttttcgcccgcaaacttccacgaagttgcgattttgacccc 6036697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 491
Target Start/End: Original strand, 5003089 - 5003137
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||||||||  ||||| |||||||||||||| | |||||||||||||||    
T  5003089 ggcttaataacagttttcgccccctaacttttaagaagttgcgattttg 5003137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 86880 - 86825
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||    
T  86880 taggcttaataggagttttcgtcccctaactttcatgaagttgcgattttggcccc 86825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 17773169 - 17773220
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  17773169 aggcttaatagcagttttcgccccctaactttcactaagttgcgattttggc 17773220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 19074470 - 19074521
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  19074470 aggcttaatagcagttttcgccccctaactttcactaagttgcgattttggc 19074521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 28204478 - 28204533
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||    
T  28204478 taggcttaatagcagttttcgccccttaactttcacgaagttgcgattttgacccc 28204533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 14340732 - 14340782
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  14340732 aggcttaataggagttttcgccccctaactttcacgaagttacgattttgg 14340782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 14349424 - 14349375
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  14349424 taggcttaatagcagttttcgccccctaacttttacgaagttgcgatttt 14349375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 491
Target Start/End: Original strand, 14856546 - 14856594
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  14856546 ggcttaatagcagttttcgcaccctaactttcacgaagttgcgattttg 14856594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 35359300 - 35359236
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaa 505  Q
    |||||||||||||||||| | ||| ||||||||||||||||||  |||||||||||  |||||||    
T  35359300 taggcttaatagtagttttcaccctctaactttcacgaagttgtaattttggcccctaagaaaaa 35359236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 36677522 - 36677574
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    |||||||||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  36677522 taggcttaataacagttttcgcccgctaactttcacgaagttgcgattttggc 36677574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 36687604 - 36687656
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggc 493  Q
    |||||||||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  36687604 taggcttaataacagttttcgcccgctaactttcacgaagttgcgattttggc 36687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 3193097 - 3193042
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| ||||| | |||||||||||||| ||||||||||||||| ||||    
T  3193097 taggcttaatagcagttttcaccccctaactttcaagaagttgcgattttgacccc 3193042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 46227003 - 46226948
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||| ||||||| ||||| || ||||||||||||||||||||||||||||| ||||    
T  46227003 taggattaatagcagttttcgtcccctaactttcacgaagttgcgattttgacccc 46226948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 492
Target Start/End: Original strand, 48348257 - 48348304
Alignment:
Q  445 cttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  48348257 cttaatagcagttttcgccccctaacttttacgaagttgcgattttgg 48348304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 51315800 - 51315745
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  |||||||||||||| | |||||||||||||||||||    
T  51315800 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 51315745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 28712776 - 28712722
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| ||||| |||||||||||||| | ||||||| ||||||||||||    
T  28712776 aggcttaatagcagttttcgccccctaacttttatgaagttgtgattttggcccc 28712722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 491
Target Start/End: Complemental strand, 38958159 - 38958109
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||||||||||| ||||| |||||||||||||||||||| || ||||||||    
T  38958159 taggcttaatagcagttttcgccccctaactttcacgaaattacgattttg 38958109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 33329611 - 33329664
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||    
T  33329611 ggcttaatagcagttttcgccctctaacttttacgaagttgcgattttgacccc 33329664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 54718993 - 54719042
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    ||||||||||| ||||| || || ||||||||||||||||||||||||||    
T  54718993 aggcttaatagcagttttcgtccactaactttcacgaagttgcgattttg 54719042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 490
Target Start/End: Original strand, 1814550 - 1814597
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    ||||| |||||||||| |||||||||||||| |||||||||| |||||    
T  1814550 ggcttcatagtagttttcgccccctaacttttacgaagttgcaatttt 1814597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 4474383 - 4474328
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||| ||||||| ||||| | || ||||||||| ||||||||||||||||||||||    
T  4474383 taggtttaatagcagttttctcctcctaacttttacgaagttgcgattttggcccc 4474328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 19404399 - 19404450
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccc 495  Q
    ||||||||  ||||| || |||||||||||||||||||||||||||| ||||    
T  19404399 gcttaataacagttttcgtcccctaactttcacgaagttgcgattttagccc 19404450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 506
Target Start/End: Complemental strand, 52008560 - 52008497
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||| |||||||||| |||| |||||||| ||||||||||| ||||||| |||  ||||||||    
T  52008560 ggctttatagtagttttcgcctcctaacttccacgaagttgcaattttggtccctaagaaaaaa 52008497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 490
Target Start/End: Complemental strand, 53184831 - 53184784
Alignment:
Q  443 ggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  53184831 ggcttaatagcagttttcgctccctaacttttacgaagttgcgatttt 53184784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 12759502 - 12759556
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||  |||||  ||||||||||||||| ||| ||||||||||||||||    
T  12759502 aggcttaataacagtttttgccccctaactttcaagaaattgcgattttggcccc 12759556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 20432189 - 20432239
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttgg 492  Q
    ||||||||||| |||||  ||||||||||||| |||||||||||| |||||    
T  20432189 aggcttaatagcagtttttgccccctaacttttacgaagttgcgactttgg 20432239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 44586097 - 44586047
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||| |||||  |||||||||||||| | |||||||||||||||||||    
T  44586097 ttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 44586047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 54464478 - 54464425
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||||| |||||| || |||||||||||||||| ||||||| ||||||||    
T  54464478 aggcttaatagcagtttc-gctccctaactttcacgaatttgcgatattggcccc 54464425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 27178141 - 27178186
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattt 489  Q
    ||||||||| ||||| || ||||||||||| |||||||||||||||    
T  27178141 gcttaatagcagttttcgtcccctaacttttacgaagttgcgattt 27178186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 28944281 - 28944228
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||||||||| |||||  | ||||||||||| || |||||||||||||||||    
T  28944281 taggcttaatagcagtttttgtcccctaacttttactaagttgcgattttggcc 28944228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 506
Target Start/End: Original strand, 578421 - 578477
Alignment:
Q  450 tagtagtttccgccccctaactttcacgaagttgcgattttggccccacagaaaaaa 506  Q
    ||||| ||| |||||| ||||||||||||||||| ||||||| ||||  ||||||||    
T  578421 tagtaatttgcgccccttaactttcacgaagttgagattttgacccctaagaaaaaa 578477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 25248996 - 25248948
Alignment:
Q  446 ttaatagtagtttccgccccctaactttcacgaagttgcgattttggcc 494  Q
    |||||| |||||| |||||  ||| ||||||||||||||||||||||||    
T  25248996 ttaataatagttttcgccctttaattttcacgaagttgcgattttggcc 25248948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 47189599 - 47189651
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    ||||||||  ||||| ||| |||||||||| | ||||||||||||||||||||    
T  47189599 gcttaataacagttttcgctccctaacttttatgaagttgcgattttggcccc 47189651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 490
Target Start/End: Original strand, 46075 - 46123
Alignment:
Q  442 aggcttaatagtagtttccgccccctaactttcacgaagttgcgatttt 490  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||||    
T  46075 aggctttatagcagttttcgccccctaactttcacgaagttgcgatttt 46123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 19038 - 19086
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattt 489  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  19038 taggcttaatagtagttttcgccccttaactttcacgaagttgtgattt 19086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 1469 - 1524
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  |||||||||||||||| |||||| ||||||||||||    
T  1469 taggcttaatagcagttttagccccctaactttcacaaagttgagattttggcccc 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 3637 - 3692
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  |||||||||||||| | |||||||||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 3637 - 3692
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||| |||||  |||||||||||||| | |||||||||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 6061 - 6113
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||||||||||||||  |||| |||||||||||||||||| ||||||| ||||    
T  6061 gcttaatagtagtttttgccctctaactttcacgaagttgtgattttgacccc 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 491
Target Start/End: Complemental strand, 9653 - 9603
Alignment:
Q  441 taggcttaatagtagtttccgccccctaactttcacgaagttgcgattttg 491  Q
    |||| ||||||| ||||| | || |||||||||||||||||||||||||||    
T  9653 taggtttaatagcagttttcacctcctaactttcacgaagttgcgattttg 9603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 723 - 671
Alignment:
Q  444 gcttaatagtagtttccgccccctaactttcacgaagttgcgattttggcccc 496  Q
    |||| |||| ||||| || | ||||||||| ||||||||||||||||||||||    
T  723 gcttcatagcagttttcgtctcctaacttttacgaagttgcgattttggcccc 671  T

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