View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-INSERTION-5 (Length: 454)
Name: NF0235-INSERTION-5
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-INSERTION-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 43715816 - 43715370
Alignment:
| Q |
8 |
ataccatgttttcctttcaatccatgtttctattttgaacattggcttacgagctacaacaagtgtgtgggttttaaaaa-ttggatgcatctaattttg |
106 |
Q |
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| T |
43715816 |
ataccatgttttcctttcaatccatgtttctattttgaacattggcttacgagctacaacaagtgtgtgggttttaaaaaattggatgcatctaattttg |
43715717 |
T |
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| Q |
107 |
tatgacagatttttatgtaattgctttgttcgccttgttcatatggtttgcatatccataagtgattcttttactgtgttcaaatttatagttagaaatc |
206 |
Q |
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| T |
43715716 |
tatgacagatttttatgcaattgctttgttcgccttgttcatatggtttgcatatccataagtgattcttttactgtgttcaaatttatagttagaaatc |
43715617 |
T |
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| Q |
207 |
aactataacaaatcacttgtgcgatgaaattttttcattcatttttcaatgagttcagtttatctgtttttgtaaattagccaaattacttaaagataat |
306 |
Q |
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| T |
43715616 |
aactgtaacaaatcacttgcgcgatgaaattttttcattcatttttcaatgagttcagtttatct-attttgtaaattagccaaattacttaaagataat |
43715518 |
T |
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| Q |
307 |
agggaaagacaccaaatgcaacttcatgaggggataaattttttgcagatttcagatggtctatactaaaacgccgcattgaatcttatcatattgcaaa |
406 |
Q |
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| T |
43715517 |
agggaaagacaccaaatgcaacttcatgaggggataaattttttgcagatttcagatggtctatactaaaacgccgcattgaatcttatcatattgcaaa |
43715418 |
T |
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| Q |
407 |
aggtctgtgtccttgctcttcaccgtcccccctcctttcctcaattac |
454 |
Q |
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| T |
43715417 |
aggtctgtgtccttgctcttcaccgtcccccctccttgcctcaattac |
43715370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 170 - 408
Target Start/End: Original strand, 52891930 - 52892170
Alignment:
| Q |
170 |
gattcttttactgtgttcaaatttatag--ttagaaatcaactataacaaatcacttgtgcgatgaaattttttcattcatttttcaatgagttcagttt |
267 |
Q |
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| T |
52891930 |
gattcttttactgagttcaaatttatagagttagaaatcaactgctacgaatcacttgtcggatgaaatttattcattcatttttcaatgagtgcagttt |
52892029 |
T |
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| Q |
268 |
atctgtttttgtaaattagccaaattacttaaagataatagggaaagacaccaaatgcaacttcatgaggggataaatttt-ttgcagatttcagatggt |
366 |
Q |
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| T |
52892030 |
atctatctt-gtaagttggcaaaatttcttaaagataatagggaaagacaccaaatgcaacttcataagaggatatatttttttgcagatttcagatggt |
52892128 |
T |
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| Q |
367 |
ctatactaaaacgccgcattgaatcttatcatattgcaaaag |
408 |
Q |
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| T |
52892129 |
ctgtactacaacgccgcattgactcttagcatattgcaaaag |
52892170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 52891796 - 52891929
Alignment:
| Q |
8 |
ataccatgttttcctttcaatccat-gtttctattttgaacattggcttacgagctacaacaagtgtgtgggttttaa-aaattggatgcatctaatttt |
105 |
Q |
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||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
52891796 |
ataccatgttttcttttcaacccattgtttctattttgaacattggcttacgagctacaacaagtgtgtgggttataagaagttggatgcatctaatttt |
52891895 |
T |
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| Q |
106 |
gtatgacagatttttatgtaattgctttgttcgc |
139 |
Q |
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| T |
52891896 |
gtatggcagttttttatgcaattgctttgttcgc |
52891929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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