View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-INSERTION-7 (Length: 279)
Name: NF0235-INSERTION-7
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-INSERTION-7 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 30336577 - 30336440
Alignment:
| Q |
134 |
aaattggttgaggttgcaattgggaaaatctgtttcctaccacgccttgcttcctcgaatcacgcagtactattaacagaatttgccagctctccatcca |
233 |
Q |
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| T |
30336577 |
aaattggttgaggttgccattgggaaaatctgtttcctaccacgccttgcgtcctcgaatcacgcagtactattaacagaatttgccagctctccatcca |
30336478 |
T |
|
| Q |
234 |
catgtcctttcccacattttatgacaccattatacata |
271 |
Q |
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| T |
30336477 |
catgtcctttcccacattttatgacacaattatacata |
30336440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 30336689 - 30336594
Alignment:
| Q |
7 |
aataatgttttaattcaaattaagtacacagtagatggataacaatttggtttatttagcaacaaatgaagatgaataagaattggagtgttgtta |
102 |
Q |
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| T |
30336689 |
aataatggtttaattcaaattaagtacacagtagatggataacaatttggtttatttagcaacaaatgaagatggataagaattggagtcttgtta |
30336594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 30323712 - 30323639
Alignment:
| Q |
155 |
gggaaaatctgtttcctaccacgccttgcttcctcgaatcacgcagtactattaacagaatttgccagctctcc |
228 |
Q |
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| T |
30323712 |
gggaaaatcgatttcttaccacgccttgcttcctggaatcccacgttactattaacagaattttccagctctcc |
30323639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22922833 - 22922891
Alignment:
| Q |
200 |
gtactattaacagaatttgccagctctccatccacatgtcctttcccacattttatgac |
258 |
Q |
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| T |
22922833 |
gtactattaacagaatttgccagcacccattccaactgtccttgcccacattttatgac |
22922891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22927486 - 22927544
Alignment:
| Q |
200 |
gtactattaacagaatttgccagctctccatccacatgtcctttcccacattttatgac |
258 |
Q |
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|||||||||||||||||||||||| | | |||| ||||||| ||||||||||||||| |
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| T |
22927486 |
gtactattaacagaatttgccagcacccattccaactgtccttgcccacattttatgac |
22927544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22930530 - 22930588
Alignment:
| Q |
200 |
gtactattaacagaatttgccagctctccatccacatgtcctttcccacattttatgac |
258 |
Q |
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|||||||||||||||||||||||| | | |||| ||||||| ||||||||||||||| |
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| T |
22930530 |
gtactattaacagaatttgccagcacccattccaactgtccttgcccacattttatgac |
22930588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22931850 - 22931908
Alignment:
| Q |
200 |
gtactattaacagaatttgccagctctccatccacatgtcctttcccacattttatgac |
258 |
Q |
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|||||||||||||||||||||||| | | |||| ||||||| ||||||||||||||| |
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| T |
22931850 |
gtactattaacagaatttgccagcacccattccaactgtccttgcccacattttatgac |
22931908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22983765 - 22983823
Alignment:
| Q |
200 |
gtactattaacagaatttgccagctctccatccacatgtcctttcccacattttatgac |
258 |
Q |
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|||||||||||||||||||||||| | | |||| ||||||| ||||||||||||||| |
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| T |
22983765 |
gtactattaacagaatttgccagcacccattccaactgtccttgcccacattttatgac |
22983823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 22997353 - 22997411
Alignment:
| Q |
200 |
gtactattaacagaatttgccagctctccatccacatgtcctttcccacattttatgac |
258 |
Q |
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|||||||||||||||||||||||| | | |||| ||||||| ||||||||||||||| |
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| T |
22997353 |
gtactattaacagaatttgccagcacccattccaactgtccttgcccacattttatgac |
22997411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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