View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-INSERTION-8 (Length: 253)

Name: NF0235-INSERTION-8
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-INSERTION-8
NF0235-INSERTION-8
[»] chr3 (2 HSPs)
chr3 (8-253)||(50311125-50311370)
chr3 (63-154)||(17508685-17508776)
[»] chr4 (2 HSPs)
chr4 (61-135)||(47924335-47924409)
chr4 (61-125)||(41940610-41940674)
[»] chr8 (2 HSPs)
chr8 (60-135)||(15243469-15243544)
chr8 (61-125)||(1758679-1758743)
[»] chr2 (5 HSPs)
chr2 (60-135)||(45036115-45036190)
chr2 (60-135)||(44440412-44440487)
chr2 (67-135)||(37192996-37193064)
chr2 (61-125)||(8271187-8271251)
chr2 (67-123)||(25524127-25524183)
[»] chr1 (3 HSPs)
chr1 (61-134)||(9427713-9427786)
chr1 (61-125)||(11075846-11075910)
chr1 (60-124)||(16824166-16824230)
[»] scaffold0013 (1 HSPs)
scaffold0013 (61-135)||(54824-54898)
[»] chr6 (3 HSPs)
chr6 (61-134)||(29047236-29047309)
chr6 (62-125)||(10992931-10992994)
chr6 (68-147)||(16728092-16728170)
[»] chr7 (2 HSPs)
chr7 (61-138)||(25828460-25828537)
chr7 (61-125)||(5464623-5464687)
[»] chr5 (1 HSPs)
chr5 (61-125)||(12291853-12291917)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 50311125 - 50311370
Alignment:
Q  8 aaatttatatacatattttgttatcataaacatgcatcaatgtagtggtatatcattttcatgtaaaacatctttaataacaatgatgtcagtagcataa 107  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  50311125 aaatttatatacatattttgttatcagaaacatgcaccaatgtagtgttatatcatttccatgtaaaacatctttaacaacaatgatgtcagtagcataa 50311224  T
Q  108 atgtgcaaggcatgatcatgatcatcaacaaacaactcaaccgcttctaaggaaccgcctacaaataatattcgtatagccttagttgtgcaaaaaatca 207  Q
    ||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||| |||| |||||| ||||||||    
T  50311225 atgtataagacatgatcatgatcatcaacaaacaactcaaccgtctctaaggaaccgtctacaaataatattggtatagtcttaattgtgcgaaaaatca 50311324  T
Q  208 aaacacatttagctaaggtgcaattcagttaacaacgcattacctc 253  Q
    | |||||||||||||||||||||||||  |||||||||||||||||    
T  50311325 agacacatttagctaaggtgcaattcacctaacaacgcattacctc 50311370  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 17508776 - 17508685
Alignment:
Q  63 ttttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaacaaacaactcaaccgcttc 154  Q
    |||||||||||||||||| |||||  || |||||||||||||||| | ||||| | ||||||| || |||||| || ||| ||||| |||||    
T  17508776 ttttcatgtaaaacatctctaatatgaaggatgtcagtagcataagtatgcaacgtatgatcacgaccatcaataatcaagtcaactgcttc 17508685  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 47924335 - 47924409
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaa 135  Q
    ||||||||||||||||||||  ||||  || |||||||||||||||| ||||||||| |||||||||||||||||    
T  47924335 cattttcatgtaaaacatctcgaatatgaaggatgtcagtagcataagtgtgcaaggtatgatcatgatcatcaa 47924409  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 41940610 - 41940674
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    ||||| |||||||||||||| |||||  || |||||| ||||||||| ||||||||| |||||||    
T  41940610 catttccatgtaaaacatctctaatatgaaggatgtcggtagcataagtgtgcaaggtatgatca 41940674  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 15243544 - 15243469
Alignment:
Q  60 tcattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaa 135  Q
    ||||||||||||||||||||| |||||  || ||||| |||||||||| ||||||||| |||||||||| ||||||    
T  15243544 tcattttcatgtaaaacatctctaatatgaaggatgtgagtagcataagtgtgcaaggtatgatcatgaccatcaa 15243469  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 1758679 - 1758743
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    |||||||||||||| ||||| |||||  || ||||| ||| |||||| ||||||||| |||||||    
T  1758679 cattttcatgtaaatcatctctaatatgaaggatgttagtggcataagtgtgcaaggtatgatca 1758743  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 45036115 - 45036190
Alignment:
Q  60 tcattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaa 135  Q
    ||||||||||||||||||||| |||||  || |||||||||||||||| ||||||||| |||||||| | ||||||    
T  45036115 tcattttcatgtaaaacatctctaatatgaaggatgtcagtagcataagtgtgcaaggtatgatcatcaccatcaa 45036190  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 44440487 - 44440412
Alignment:
Q  60 tcattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaa 135  Q
    ||||||||||||||||||||| |||||  || ||||| |||||||||| ||||||||| ||||||| || ||||||    
T  44440487 tcattttcatgtaaaacatctctaatatgaaggatgttagtagcataagtgtgcaaggtatgatcacgaccatcaa 44440412  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 37193064 - 37192996
Alignment:
Q  67 catgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaa 135  Q
    |||||||||||||| |||||  || ||||| |||||||||||||||||||  ||||||| || ||||||    
T  37193064 catgtaaaacatctctaatatgaaggatgtaagtagcataaatgtgcaagatatgatcacgaccatcaa 37192996  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 8271187 - 8271251
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    |||||||||||||| ||||| |||||  || || ||||||| ||||| ||||||||| |||||||    
T  8271187 cattttcatgtaaagcatctctaatatgaaggacgtcagtaacataagtgtgcaaggtatgatca 8271251  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 25524183 - 25524127
Alignment:
Q  67 catgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgat 123  Q
    |||||||| || || |||||  |||||||||||||||||||||||| |||| |||||    
T  25524183 catgtaaatcaactctaatataaatgatgtcagtagcataaatgtgtaaggtatgat 25524127  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 9427786 - 9427713
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatca 134  Q
    ||||| |||||||||||||| |||||  || ||||||||||| |||||||||||||| ||||||| || |||||    
T  9427786 catttccatgtaaaacatctctaatatgaaggatgtcagtagtataaatgtgcaaggtatgatcacgaccatca 9427713  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 11075910 - 11075846
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    |||||||||||||| |||||||||||  || ||||| |||||||||| ||||||||| |||||||    
T  11075910 cattttcatgtaaagcatctttaatatgaaggatgttagtagcataagtgtgcaaggtatgatca 11075846  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 16824166 - 16824230
Alignment:
Q  60 tcattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatc 124  Q
    ||||||||||||||| ||||| |||||  || |||||||||||||||| ||||||| | ||||||    
T  16824166 tcattttcatgtaaagcatctctaatatgaaggatgtcagtagcataagtgtgcaaagtatgatc 16824230  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 54824 - 54898
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaa 135  Q
    ||||| |||||||||||||| |||||  || |||||||| | ||||||||||||||| ||||||| || ||||||    
T  54824 catttccatgtaaaacatctctaatatgaaggatgtcagcaacataaatgtgcaaggtatgatcacgaccatcaa 54898  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 29047309 - 29047236
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatca 134  Q
    ||||| |||||||| ||||| |||||  || ||||| |||||||||||||||||||| ||||||| || |||||    
T  29047309 catttccatgtaaagcatctctaatatgaaggatgttagtagcataaatgtgcaaggtatgatcacgaccatca 29047236  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 10992931 - 10992994
Alignment:
Q  62 attttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    |||| |||||||||||||| ||| |  || |||||||||||||||| ||||||||| |||||||    
T  10992931 atttccatgtaaaacatctctaacatgaaagatgtcagtagcataagtgtgcaaggtatgatca 10992994  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 16728092 - 16728170
Alignment:
Q  68 atgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaacaaacaactcaa 147  Q
    ||||||||||| |||||||  || |||||||||| ||||| || |||||| ||| ||| ||||| |||||||||||||||    
T  16728092 atgtaaaacatttttaatataaaagatgtcagtaacataa-tgcgcaaggtatggtcacgatcaacaacaaacaactcaa 16728170  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 25828460 - 25828537
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatcatgatcatcaacaa 138  Q
    |||||||||||| | |||||||||||  || ||||||| |||||||| | ||||||| ||||||| || || ||||||    
T  25828460 cattttcatgtagagcatctttaatatgaaggatgtcaatagcataactctgcaaggtatgatcacgaccaacaacaa 25828537  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 5464623 - 5464687
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    ||||| |||||||||||||| |||||  || ||||  |||||||||| ||||||||| |||||||    
T  5464623 catttccatgtaaaacatctctaatatgaaggatgctagtagcataagtgtgcaaggtatgatca 5464687  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 12291853 - 12291917
Alignment:
Q  61 cattttcatgtaaaacatctttaataacaatgatgtcagtagcataaatgtgcaaggcatgatca 125  Q
    |||||||||||||||||||| |||||  || ||| ||  |||||||| ||||||| |||||||||    
T  12291853 cattttcatgtaaaacatctctaatatgaaggatctcgctagcataagtgtgcaatgcatgatca 12291917  T

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