View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-INSERTION-9 (Length: 238)
Name: NF0235-INSERTION-9
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-INSERTION-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 16608994 - 16608766
Alignment:
| Q |
8 |
agtaggaggctcccaatggaacaacttgatgataggaggaaatttaaaggctggagaaatatttaaatctcccaaaatagaagcgtcaagtctcgccacc |
107 |
Q |
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| T |
16608994 |
agtaggaggctcccaatggaacaacttgatcataggaggaaatttaaaggctgga---atatttaaatctcccaaaatagaagcgccaagtctcgccacc |
16608898 |
T |
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| Q |
108 |
ttcttcaacgtcggaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactctatcacaaagcataatgcaaaaccattatataataag |
207 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16608897 |
ttcttcaacgtcagaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactccatcacaaagcataatgcaaaaccattatataataag |
16608798 |
T |
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| Q |
208 |
gctgc-aaatctatatatatttcaaagttaaa |
238 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
16608797 |
gctgcaaaatctatatatatttcaaagttaaa |
16608766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 53510194 - 53510299
Alignment:
| Q |
96 |
agtctcgccaccttcttcaacgtcggaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactctatcacaaagcataatgcaaaacca |
195 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||| || || ||| |||||| || ||||||||| |
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| T |
53510194 |
agtctcaccaccttcttcaacgtcggaccttcataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcgtaaagcacaacgcaaaacca |
53510293 |
T |
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| Q |
196 |
ttatat |
201 |
Q |
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||||| |
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| T |
53510294 |
atatat |
53510299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 53513803 - 53513908
Alignment:
| Q |
96 |
agtctcgccaccttcttcaacgtcggaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactctatcacaaagcataatgcaaaacca |
195 |
Q |
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|||||| ||||||||||||||||| ||||| ||| ||||||||||| ||| |||| |||||||||| || || |||| |||||| |||||||||||| |
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| T |
53513803 |
agtctcaccaccttcttcaacgtcagacctacataaggaccaaaaacaaggaactgtcaaatttgtatacaattccatcataaagcacaatgcaaaacca |
53513902 |
T |
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| Q |
196 |
ttatat |
201 |
Q |
| |
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||||| |
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| T |
53513903 |
atatat |
53513908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 53524103 - 53524208
Alignment:
| Q |
96 |
agtctcgccaccttcttcaacgtcggaccttcatcgggaccaaaaaccgggagttgtcgaatttgtataaaactctatcacaaagcataatgcaaaacca |
195 |
Q |
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|||||| ||||||||||||||||| ||||||||| | ||||||||| || |||| |||||||||| || || |||| |||||||||| ||||||| |
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| T |
53524103 |
agtctcaccaccttcttcaacgtcagaccttcataagtaccaaaaacaaagaactgtcaaatttgtatacaattccatcataaagcataatataaaacca |
53524202 |
T |
|
| Q |
196 |
ttatat |
201 |
Q |
| |
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||||| |
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|
| T |
53524203 |
atatat |
53524208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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