View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-Insertion-12 (Length: 1035)

Name: NF0235-Insertion-12
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-Insertion-12
NF0235-Insertion-12
[»] chr5 (1 HSPs)
chr5 (8-1019)||(1450359-1451366)


Alignment Details
Target: chr5 (Bit Score: 843; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 8 - 1019
Target Start/End: Original strand, 1450359 - 1451366
Alignment:
Q  8 attctctcactgacttgagcatcaaagtatttgtaggtaccacctcatcttccacgacaatgaaacacttctcaccaagttcagccaacctcttcagtcc 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450359 attctctcactgacctgagcatcaaagtatttgtaggtaccacctcatcttccacgacaatgaaacacttctcaccaagttcagccaacctcttcagtcc 1450458  T
Q  108 atttcggatcagtagttctcgttcatcaaagaaaatctttttatacttcactcgaattgatagtctactctttttaatgtttggaaatatcaatctcatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450459 atttcggatcagtagttctcgttcatcaaagaaaatctttttatacttcactcgaattgatagtctactctttttaatgtttggaaatatcaatctcatt 1450558  T
Q  208 ttcagtgttaaatttcaataccaatgtagacggatccttgctggaagtcctaattcagatcctgaacatgaactccttaagagtgctacaatttcaagag 307  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450559 ttcagtgttaaatttcaataccagtgtagacggatccttgctggaagtcctaattcagatcctgaacatgaactccttaagagtgctacaatttcaagag 1450658  T
Q  308 cactctctgtatccatctctgcaggttctaaatgttactagaaaaattgcctccatctgtgcattggttttgtgattggaaatccatccatacctttaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450659 cactctctgtatccatctctgcaggttctaaatgttactagaaaaattgcctccatctgtgcattggttttgtgattggaaatccatccatacctttaaa 1450758  T
Q  408 ttttttaatgtttttgtgcagatacaagaaaagacttggagtgaagtactaataaggaatgaacattttataaaatgtattaggatttaggcgcatatgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450759 ttttttaatgtttttgtgcagatacaagaaaagacttggagtgaagtactaataaggaatgaacattttataaaatgtattaggatttaggcgcatatgt 1450858  T
Q  508 atagaatcatatcatggtgctgtaagtgtaaataatgttttcttgtgtgacaagatactgtagctattgttgctgttttatatttactgctcttgacttt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450859 atagaatcatatcatggtgctgtaagtgtaaataatgttttcttgtgtgacaagatactgtagctattgttgctgttttatatttactgctcttgacttt 1450958  T
Q  608 aggtgtgtatttgtaacctgtttcaaataaataatttactgctgccnnnnnnnnnnnnnnnctacgtctaagtctactacacgattgagtgtcctctcca 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||    
T  1450959 aggtgtgtatttgtaacctgtttcaaataaataatttactgctgcc-----ttttttttttctacgtctaagtctactacacgattgagtgtcctctcca 1451053  T
Q  708 acccttcatagaaggtcggtggtttggacactaacgatgttgagttcggatgatttaaatnnnnnnnnnnnnttannnnnnnaggaactagatcagaaac 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||       ||||||||||||||||||    
T  1451054 acccttcatagaaggtcggtggtttggacactaacgatgttgagttcggatgatttaaataaaaacaaaaaattatttttttaggaactagatcagaaac 1451153  T
Q  808 tataagaaaaggttgtctattgacagaaaactctattttacattcatagcatgtgtatagattatagaatcataaaactaaaacctagactggatttgtg 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1451154 tataagaaaaggttgtctattgacagaaaactctattttacattcgtagcatgtgtatagattatagaatcataaaactaaaacctagactggatttgtg 1451253  T
Q  908 tatcgacattnnnnnnnnncctcaatatataaaagacggtaaatcactattaaacttgaaatttggaccgtctgatctc-atccg-cagcactaccttat 1005  Q
    ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1451254 tatcgacatt-aaaaaaaacctcaatatataaaagacggtaaatcactattaaacttgaaatttggaccgtctgatctcaatccgccagcactaccttat 1451352  T
Q  1006 ccactattccacca 1019  Q
    |||| |||||||||    
T  1451353 ccacaattccacca 1451366  T

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