View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235-Insertion-17 (Length: 939)
Name: NF0235-Insertion-17
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-17 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 779; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 7 - 925
Target Start/End: Complemental strand, 20817664 - 20816739
Alignment:
| Q |
7 |
aataattgtgtgataaaagtcatatcaggttttgtgggcaatttgnnnnnnnn---cgcgtccagaaattaaggcacacgcgtccagaaattaaggcagc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20817664 |
aataattgtgtgataaaagtcatatcaggttttgtaggcaatttgaaaaaaaaaaacgcgtccagaaattaaggcacacgcgtccagaaattaaggcagc |
20817565 |
T |
|
| Q |
104 |
acagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattcacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20817564 |
acagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattcacc |
20817465 |
T |
|
| Q |
204 |
acgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20817464 |
acgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgc |
20817365 |
T |
|
| Q |
304 |
aagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgcctttctta |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
20817364 |
aagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgtctttctta |
20817265 |
T |
|
| Q |
404 |
tgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcggacattatcagctga |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
20817264 |
tgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcgaacattatcagctga |
20817165 |
T |
|
| Q |
504 |
tttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcattgttttgcttgtaggcatgatatacattcaagagtgtgagatgatct |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20817164 |
tttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacattcaagagtgtgagatgatct |
20817065 |
T |
|
| Q |
604 |
ccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctccttaggccggataaagcaattgggtactgacagcatcgcagaaattg |
703 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20817064 |
ccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtactgacagcatcgcagaaattg |
20816965 |
T |
|
| Q |
704 |
acagaatctcatttgaacagttgaactcagggctaacaaacaagcatctttgacatctgagggtcc-atggaaactcactcataatctcacccaactttg |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |
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|
| T |
20816964 |
acagaatctcatttgaacagttgaactcagggctaac-aacaagcatctttgacatctgagggtccaacggaaactcactcataatcttacccaactttg |
20816866 |
T |
|
| Q |
803 |
-taaggtaccttcatcatccattgcaccc-agtaattcaacacttccaaagcgcgcatttaaggtttctggtgcaggagggtccataa--gccaaatgca |
898 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| | |
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|
| T |
20816865 |
ttaagttaccttcatcatccattgcacccaagtaattcaacacttccaaagcgcgca-ttaaggtttctggtgcaggagggtccataaagtcaaaatgta |
20816767 |
T |
|
| Q |
899 |
ctaaatcgtctataccc-atttcttcaa |
925 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
20816766 |
ctaaatcgtctatacccaatttcttcaa |
20816739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 165 - 925
Target Start/End: Original strand, 33387604 - 33388365
Alignment:
| Q |
165 |
atcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagata |
264 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
33387604 |
atcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagata |
33387703 |
T |
|
| Q |
265 |
acccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgag |
364 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||||| | ||| ||| || ||||| |||||||||||| ||||| || ||| ||| ||||| |
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|
| T |
33387704 |
acccactcgggcttggggtccaggcaatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtccgct---caagatgag |
33387800 |
T |
|
| Q |
365 |
ccacctgcatgaaatatcctgctagcattgcctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagc |
464 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
33387801 |
ccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagc |
33387900 |
T |
|
| Q |
465 |
catgatacgcactagctgttgtcggacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcattgttttgc |
564 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| | |||| | ||||| |||||| || ||||||||||| | |||||||||||||||| |
|
|
| T |
33387901 |
catgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgc |
33388000 |
T |
|
| Q |
565 |
ttgtaggcatgatatacattcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctccttaggcc |
664 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||| ||| |||||| |
|
|
| T |
33388001 |
ttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggcc |
33388100 |
T |
|
| Q |
665 |
ggataaagcaattgggtactgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaaacaagcatctttgacatctgag |
764 |
Q |
| |
|
| ||||||||||||||||| | | ||||||||||||||| |||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
33388101 |
gaataaagcaattgggtaccgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaac-aataagcatctttgacatctgag |
33388199 |
T |
|
| Q |
765 |
ggtcc-atggaaactcactcataatctcacccaactttg-taaggtaccttcatcatccattgcacc-cagtaattcaacacttccaaagcgcgcattta |
861 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
33388200 |
ggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacacttccaaagcacgca-tta |
33388298 |
T |
|
| Q |
862 |
aggtttctggtgcaggagggtccat-aag-ccaaatgcactaaatcgtctataccc-atttcttcaa |
925 |
Q |
| |
|
||||||| || |||||||||||||| ||| | ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
33388299 |
aggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaa |
33388365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 314 - 554
Target Start/End: Original strand, 38778276 - 38778513
Alignment:
| Q |
314 |
cctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgcctttcttatgttgacgta |
413 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38778276 |
cctggttgtctttaactgtcaagtagtgtcctgtccgct---caagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgta |
38778372 |
T |
|
| Q |
414 |
gtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcggacattatcagctgatttcaacacc |
513 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | | || |
|
|
| T |
38778373 |
gtagtcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgcc |
38778472 |
T |
|
| Q |
514 |
ctataattaataaagttgtcgtagcaccaagaagcatcctc |
554 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38778473 |
ctattattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 683 - 925
Target Start/End: Original strand, 38779160 - 38779406
Alignment:
| Q |
683 |
ctgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaaacaagcatctttgacatctgagggtcc-atggaaactcac |
781 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38779160 |
ctgacaacatcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaac-aacaagcatctttgacatctgagggtccaatggaaactcac |
38779258 |
T |
|
| Q |
782 |
tcataatctcacccaactttg-taaggtaccttcatcatccattgcaccc-agtaattcaacacttccaaagcgcgcatttaaggtttctggtgcaggag |
879 |
Q |
| |
|
||||||||||||| | ||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||| |||| | |||||||| || ||||||| |
|
|
| T |
38779259 |
tcataatctcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaattcaacacttccaaagcacgca-tcaaggtttcaggggcaggag |
38779357 |
T |
|
| Q |
880 |
ggtccat-aag-ccaaatgcactaaatcgtctataccca-tttcttcaa |
925 |
Q |
| |
|
||||||| ||| | ||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
38779358 |
ggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaa |
38779406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 557 - 684
Target Start/End: Original strand, 38778622 - 38778749
Alignment:
| Q |
557 |
tgttttgcttgtaggcatgatatacattcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctc |
656 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
|
| Q |
657 |
cttaggccggataaagcaattgggtact |
684 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
38778722 |
cctaggccggataaagcaattgggtact |
38778749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 38778045 - 38778158
Alignment:
| Q |
194 |
accattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatt |
293 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
38778045 |
accattcaccacgaatatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatt |
38778144 |
T |
|
| Q |
294 |
tgatggatgcaagt |
307 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38778145 |
tgatggatgcaagt |
38778158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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