View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-Insertion-24 (Length: 1123)

Name: NF0235-Insertion-24
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-Insertion-24
NF0235-Insertion-24
[»] chr1 (10 HSPs)
chr1 (468-906)||(26316889-26317327)
chr1 (250-471)||(26316625-26316848)
chr1 (6-225)||(26316418-26316623)
chr1 (757-905)||(338060-338208)
chr1 (756-861)||(8421573-8421678)
chr1 (784-903)||(36386812-36386929)
chr1 (757-861)||(43407901-43408006)
chr1 (1026-1086)||(26317451-26317513)
chr1 (757-835)||(21264761-21264840)
chr1 (758-835)||(6835953-6836031)
[»] chr5 (9 HSPs)
chr5 (468-731)||(27026356-27026620)
chr5 (176-439)||(27026007-27026282)
chr5 (756-898)||(38000844-38000988)
chr5 (767-862)||(40687556-40687650)
chr5 (799-856)||(6308666-6308723)
chr5 (756-846)||(27026620-27026711)
chr5 (780-891)||(30909770-30909877)
chr5 (757-827)||(38984700-38984770)
chr5 (536-613)||(42860948-42861025)
[»] chr8 (4 HSPs)
chr8 (755-898)||(41958442-41958586)
chr8 (757-898)||(44436065-44436205)
chr8 (759-846)||(40841565-40841652)
chr8 (757-856)||(22816489-22816589)
[»] chr2 (7 HSPs)
chr2 (767-862)||(18292863-18292957)
chr2 (757-905)||(40447433-40447581)
chr2 (780-856)||(29270659-29270735)
chr2 (805-905)||(40729481-40729581)
chr2 (757-820)||(41340829-41340892)
chr2 (757-835)||(1193599-1193677)
chr2 (784-856)||(44788543-44788615)
[»] chr7 (5 HSPs)
chr7 (756-862)||(12196710-12196817)
chr7 (757-862)||(12911848-12911952)
chr7 (757-861)||(10289325-10289430)
chr7 (757-855)||(49170428-49170526)
chr7 (755-835)||(9993289-9993370)
[»] chr4 (3 HSPs)
chr4 (757-862)||(40458906-40459011)
chr4 (757-856)||(69251-69350)
chr4 (780-862)||(55162161-55162242)
[»] chr3 (6 HSPs)
chr3 (757-862)||(43278380-43278485)
chr3 (743-856)||(17542815-17542928)
chr3 (786-891)||(8730831-8730938)
chr3 (786-891)||(9082718-9082825)
chr3 (757-861)||(7337228-7337333)
chr3 (784-846)||(9104202-9104264)
[»] chr6 (1 HSPs)
chr6 (777-856)||(24158897-24158975)
[»] scaffold0120 (1 HSPs)
scaffold0120 (743-831)||(2645-2735)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 468 - 906
Target Start/End: Original strand, 26316889 - 26317327
Alignment:
Q  468 taactcttgatcattcaacaactttgtatgtgtacaaaatcttaaggtaagtcatattgtcgtccctttttccattctcttgttcatattctagtattaa 567  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26316889 taactcttgatcattcaacaactttgcatgtgtacaaaatcttaaggtaagtcatattgtcgtccctttttccattctcttgttcatattctagtattaa 26316988  T
Q  568 gtccttttctcctttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagacttgctcg 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26316989 gtccttttctcctttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagacttgctcg 26317088  T
Q  668 tgcatttggtcagaatcaatcttaggacgtgctcgtgcttttggttcataatcaatcttagggacctctttcaacggaaaaacaccataaggtaagggct 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  26317089 tgcatttggtcagaatcaatcttaggacgtgctcgtgcttttggtttagaatcaatcttagggacgtctttcaacggaaaagcaccataaggtaagggct 26317188  T
Q  768 ttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgtatttgagag 867  Q
    |||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26317189 ttttcccaaacgtccataataagtgctagggctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgtatttgagag 26317288  T
Q  868 taaaatttaatcttttctaaaagtggttattcttaattt 906  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26317289 taaaatttaatcttttctaaaagtggttattcttaattt 26317327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 250 - 471
Target Start/End: Original strand, 26316625 - 26316848
Alignment:
Q  250 tgcctaattgattttcctctcctttcttatacttggaaagtagttcttgtttccttttgacccaaatcaagtgcatgatctctctatctctttatctttc 349  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26316625 tgcctaaatgattttcctctcctttcttatacgtggaaagtaattcttgtttccttttgacccaaatcaagtgcatgatctctctatctctttatctttc 26316724  T
Q  350 acggtgatactactacactcccatatttagtggcctcttgatgaattcatttgagtacaataaaaccctt----cttactgctcaagccatttcatcgta 445  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  26316725 acggtgatactact--actcccatatttagtggcctcttgatgaattcatttgagtacaataaaaccctttttacttactgctcaagccatttcatcgta 26316822  T
Q  446 agttaaagagacaacaattttctaac 471  Q
    || | ||||||||| |||||||||||    
T  26316823 aggtcaagagacaataattttctaac 26316848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 26316418 - 26316623
Alignment:
Q  6 cattattgtctcttt-aagtatcaaaatattactcttccttctacggtaaacatttttgagatggtaatatatcttgtagtgagatgtggattacgctga 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |               |||||||||||||||||||| |||    
T  26316418 cattattgtctcttttaagtatcaaaatattactcttccttctacggtaaacatttttttg---------------gtagtgagatgtggattacgttga 26316502  T
Q  105 ataggattcaaaggaaactaaaatcagttcctattatttctccattcacttttattgctattgaccttcacttagttacttctttgaatcattccactaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26316503 ataggattcaaaggaaactaaaatcagttcctattatttctccattcatttttattgctattgaccttcacttagttgcttctttgaatcattccactaa 26316602  T
Q  205 tacctatctatgaggatccac 225  Q
    |||||||||||||||||||||    
T  26316603 tacctatctatgaggatccac 26316623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 757 - 905
Target Start/End: Original strand, 338060 - 338208
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || |||||||||||||||||| || || |||||| ||| ||||| |||||||||||| ||| |||||||||||||||||    
T  338060 aggtaagggctttttccccatacgtccatactaagtgctaga-ctatgttattaagtagaggtagtaattcttgtcttctaaaaagaaaaatagttaaaa 338158  T
Q  856 tgta-tttgagagtaaaatttaatcttttctaaaagtggttattcttaatt 905  Q
     ||| ||| | |||||||||| ||| |||||||||||| ||||| ||||||    
T  338159 cgtattttcatagtaaaattt-atcctttctaaaagtgattattattaatt 338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 756 - 861
Target Start/End: Original strand, 8421573 - 8421678
Alignment:
Q  756 aaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaa 854  Q
    ||||||||||||||||||| | || | ||||||||||||||| |||||| |||||| |||  ||||||||||||||||||||| |||||||||| |||||    
T  8421573 aaggtaagggctttttccccatacgtacatactaagtgctag-gctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaa 8421671  T
Q  855 atgtatt 861  Q
    | |||||    
T  8421672 acgtatt 8421678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 784 - 903
Target Start/End: Complemental strand, 36386929 - 36386812
Alignment:
Q  784 tactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgtatttgagagtaaaatttaatctttt 883  Q
    ||||||||| |||  ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||| |  |||||| |||||| |||    
T  36386929 tactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaataattaaagtat-tttcatggtaaaa-ttaatccttt 36386832  T
Q  884 ctaaaagtggttattcttaa 903  Q
    ||||||||| ||||| ||||    
T  36386831 ctaaaagtgattattattaa 36386812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 757 - 861
Target Start/End: Complemental strand, 43408006 - 43407901
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || |||||||||||||||||  |||||  ||||| || |||||| ||| |||||||| ||| |||||||| | ||||||    
T  43408006 aggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtcttctaaaaagaaaaacaattaaaa 43407907  T
Q  856 tgtatt 861  Q
    ||||||    
T  43407906 tgtatt 43407901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1026 - 1086
Target Start/End: Original strand, 26317451 - 26317513
Alignment:
Q  1026 aaaacatgaagaggtgagtattatgaaaatatggactttcg--tcatgtgcatgatggtgtgt 1086  Q
    ||||||||||||| |||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  26317451 aaaacatgaagagatgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgt 26317513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 757 - 835
Target Start/End: Complemental strand, 21264840 - 21264761
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtctttt 835  Q
    |||||||||||||||||| | || | | ||||||||||||| ||| ||  |||||| || ||||||||||||||||||||    
T  21264840 aggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtctttt 21264761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 758 - 835
Target Start/End: Original strand, 6835953 - 6836031
Alignment:
Q  758 ggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtctttt 835  Q
    ||||||||||||||||| | || | | ||||||||||||| ||| |   ||||||||| ||||||||||||||||||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtctttt 6836031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 7e-55; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 468 - 731
Target Start/End: Original strand, 27026356 - 27026620
Alignment:
Q  468 taactcttgatcattcaacaactttgtatgtgtacaaaatcttaaggtaag-tcatattgtcgtccctttttccattctcttgttcatattctagtatta 566  Q
    ||||||||  || ||||| ||||| |||||||||||||||||||||||||| ||||   || ||||||||| ||||||||||||||||||| || |||||    
T  27026356 taactctttctcgttcaataacttcgtatgtgtacaaaatcttaaggtaaggtcatggggttgtccctttt-ccattctcttgttcatattttattatta 27026454  T
Q  567 agtccttttctcctttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagac-ttgct 665  Q
    |||||||||||| |||||||||||||| ||||||| ||||  | ||| |||| ||||||||||||||||| |||||| |||| ||||||||||| |||||    
T  27026455 agtccttttctcatttgaagatttggctttgtctgaaagtattgttaccaacatctccaattgtatttctatattcgtgtagtacttcaaagactttgct 27026554  T
Q  666 cgtgcatttggtcagaatcaatcttaggacgtgctcgtgcttttggttcataatcaatcttaggga 731  Q
    ||||| ||||||| |||||||||||||   |||||||||| |||| || | ||| |||| ||||||    
T  27026555 cgtgcgtttggtcggaatcaatcttagagtgtgctcgtgcgtttgatttagaattaatcataggga 27026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 176 - 439
Target Start/End: Original strand, 27026007 - 27026282
Alignment:
Q  176 ttagttacttctttgaatcattccactaa-tacctatctatgaggatccacttgcaattggttttgagagatgtttgcctaattgattttcctctccttt 274  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||| || ||||||| ||||| |||||    |||||||||| |||||||||| |||    
T  27026007 ttagttacttctttgaataattccaccaaatacctatctatgaggatc-acgtgcaattagttttaagagaaacatgcctaattgtttttcctctcgttt 27026105  T
Q  275 cttata---------cttggaaa-gtagttcttgtttccttttgacccaaatcaagtgcatgatctctc----tatctctttatctttcacggtgatact 360  Q
    ||||||         | |||||| || |||| || || |||||||||||||||||||||||||||||||    |||| |||||||||| |||||||||||    
T  27026106 cttataactcggctacgtggaaaagttgttcatgatttcttttgacccaaatcaagtgcatgatctctctatgtatcgctttatcttttacggtgatact 27026205  T
Q  361 actacactcccatatttagtggcctcttgatgaattcatttgagtacaataaaacccttcttactgctcaagccatttc 439  Q
     |||| ||||  |||||||||  ||||||||||| ||||||||| |||||| ||| |||||||||||||| || |||||    
T  27026206 tctactctcc--tatttagtgatctcttgatgaagtcatttgagcacaatataactcttcttactgctcaggctatttc 27026282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 756 - 898
Target Start/End: Original strand, 38000844 - 38000988
Alignment:
Q  756 aaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaa 854  Q
    |||||||||| |||||||| | || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| | ||| |||||    
T  38000844 aaggtaagggttttttccccatacgtccatactaagtgctagagctgtgttattaaataatggtagcaattcttgtcttttaaaaagacagataattaaa 38000943  T
Q  855 atgta-tttgagagtaaaatttaatcttttctaaaagtggttatt 898  Q
    || || ||| || ||||| | ||||||||||| ||||| ||||||    
T  38000944 atatagtttcagggtaaagtctaatcttttctgaaagtagttatt 38000988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 767 - 862
Target Start/End: Original strand, 40687556 - 40687650
Alignment:
Q  767 tttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgtattt 862  Q
    ||||||||| || ||||||||||||| ||| | |||| || ||| |||  ||||||||||||||||||||| |||||||||| |||||| ||||||    
T  40687556 tttttcccatacgtccatactaagtgttag-gttgtgttagtaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtattt 40687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 799 - 856
Target Start/End: Original strand, 6308666 - 6308723
Alignment:
Q  799 ctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    ||||| |||||||||||||||||||||||||||| || | |||||||||| |||||||    
T  6308666 ctgtgttattaaatagtggtagcaattcttgtctcttgaaaagaaaaataattaaaat 6308723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 756 - 846
Target Start/End: Original strand, 27026620 - 27026711
Alignment:
Q  756 aaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaa 846  Q
    ||||||||||||||||||| | || |   |||||||||||||   |||| ||||||||||||||| ||||||||||||||| | ||||||||    
T  27026620 aaggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaaaaa 27026711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 780 - 891
Target Start/End: Original strand, 30909770 - 30909877
Alignment:
Q  780 tccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgt-atttgagagtaaaatttaat 878  Q
    |||||||||||||||||    || || |||| ||| |||||||||||||||||||||| |||||||||| |||||| || |||| |  |||||| |||||    
T  30909770 tccatactaagtgctag----gttgtgttaagtagaggtagcaattcttgtcttttaaaaagaaaaataattaaaacgtaatttcatggtaaaa-ttaat 30909864  T
Q  879 cttttctaaaagt 891  Q
    | |||||||||||    
T  30909865 cctttctaaaagt 30909877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 757 - 827
Target Start/End: Complemental strand, 38984770 - 38984700
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct 827  Q
    ||||||||| ||||||||| |||||||||||| ||| ||| ||| || |||||||||||| ||| ||||||    
T  38984770 aggtaagggttttttcccatacatccatactaggtgttagggctctgttattaaatagtgttagaaattct 38984700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 42860948 - 42861025
Alignment:
Q  536 tttccattctcttgttcatattctagtattaagtccttttctcctttgaagatttggccttgtctggaagtgctatta 613  Q
    |||||||||| |||||| ||||||| ||||||||||  || || ||||||||  |||||||||||  |||| ||||||    
T  42860948 tttccattcttttgttcgtattctaatattaagtcccattttcttttgaagagctggccttgtctcaaagtactatta 42861025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 4e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 755 - 898
Target Start/End: Complemental strand, 41958586 - 41958442
Alignment:
Q  755 taaggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaa 854  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||  | ||| |||||    
T  41958586 taaggtaagggctttttcccatacatccatattaagtgctagagctgtgttattaaatagtggtggcaattcttgtcttttaaaaaggcagataattaaa 41958487  T
Q  855 atgta-tttgagagtaaaatttaatcttttctaaaagtggttatt 898  Q
    ||||| ||| || ||||||| ||||||||| | ||||| ||||||    
T  41958486 atgtagttttagggtaaaatctaatctttttttaaagtagttatt 41958442  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 757 - 898
Target Start/End: Original strand, 44436065 - 44436205
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    ||||||||||||||||| | || || |||||||||||||  | |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  44436065 aggtaagggctttttcc-atacgtcaatactaagtgctaaggatgtgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaataattaaaat 44436163  T
Q  857 gta-tttgagagtaaaatttaatcttttctaaaagtggttatt 898  Q
    ||| ||| | ||||||| ||||||||||||||| ||| |||||    
T  44436164 gtatttttaaagtaaaa-ttaatcttttctaaatgtgattatt 44436205  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 759 - 846
Target Start/End: Complemental strand, 40841652 - 40841565
Alignment:
Q  759 gtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaa 846  Q
    ||||||||||||||||| || | | ||||||||| |||  ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  40841652 gtaagggctttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaaaaa 40841565  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 757 - 856
Target Start/End: Complemental strand, 22816589 - 22816489
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || | | | ||||||| |||  ||||| |||||||||||||| ||||||||||||| || | |||||||| | ||||||    
T  22816589 aggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaagaaaaacaattaaaa 22816490  T
Q  856 t 856  Q
    |    
T  22816489 t 22816489  T

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Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 767 - 862
Target Start/End: Complemental strand, 18292957 - 18292863
Alignment:
Q  767 tttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgtattt 862  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  18292957 tttttcccatacgtccatactaagtgctag-gctgtgttattaagtagaggtagcaattcttgtcttttaaaaagaaaaatagttaaaatgtattt 18292863  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 757 - 905
Target Start/End: Original strand, 40447433 - 40447581
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || |||||||||||||||||| || || |||||| ||| ||||| |||||||||||| ||| |||||||||||||||||    
T  40447433 aggtaagggctttttccccatacgtccatactaagtgctaga-ctatgttattaagtagaggtagtaattcttgtcttctaaaaagaaaaatagttaaaa 40447531  T
Q  856 tgta-tttgagagtaaaatttaatcttttctaaaagtggttattcttaatt 905  Q
     ||| ||| | |||||||||| ||| |||||||||||| ||||| ||||||    
T  40447532 cgtattttcatagtaaaattt-atcctttctaaaagtgattattattaatt 40447581  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 780 - 856
Target Start/End: Original strand, 29270659 - 29270735
Alignment:
Q  780 tccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||| | |||||||| | |||||||    
T  29270659 tccatactaagtgttagggttgtgctattaaatagtggtagcaattcttgtcttttgaaaagaaaaacaattaaaat 29270735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 805 - 905
Target Start/End: Complemental strand, 40729581 - 40729481
Alignment:
Q  805 tattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgta-tttgagagtaaaatttaatcttttctaaaagtggttattcttaa 903  Q
    |||||| ||| |||||||||||||||||||||| |||||||||  |||||| ||| ||| |  |||||| |||||| |||||||||||| ||||||||||    
T  40729581 tattaagtagaggtagcaattcttgtcttttaaaaagaaaaatgattaaaacgtattttcatggtaaaa-ttaatcctttctaaaagtgtttattcttaa 40729483  T
Q  904 tt 905  Q
    ||    
T  40729482 tt 40729481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 757 - 820
Target Start/End: Complemental strand, 41340892 - 41340829
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtag 820  Q
    ||||||||||||||||||| || ||||||||||||| ||||| ||||  |||||||||||||||    
T  41340892 aggtaagggctttttcccatacgtccatactaagtgttagagatgtgtcattaaatagtggtag 41340829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 757 - 835
Target Start/End: Original strand, 1193599 - 1193677
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtctttt 835  Q
    ||||||||||||||||||| |  | | |||||||||||||  || || ||||||| || ||||||||||||||||||||    
T  1193599 aggtaagggctttttcccataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtctttt 1193677  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 784 - 856
Target Start/End: Original strand, 44788543 - 44788615
Alignment:
Q  784 tactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    ||||||||| |||  ||||| |||||||||||||||| |||| ||||||||| | |||||||| | |||||||    
T  44788543 tactaagtgttaggactgtgttattaaatagtggtagtaattattgtcttttgaaaagaaaaacaattaaaat 44788615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 756 - 862
Target Start/End: Complemental strand, 12196817 - 12196710
Alignment:
Q  756 aaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaa 854  Q
    ||||||||||||||||||| | |||| | |||||||||| ||  || || ||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  12196817 aaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaataattaaa 12196718  T
Q  855 atgtattt 862  Q
    ||||||||    
T  12196717 atgtattt 12196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 757 - 862
Target Start/End: Complemental strand, 12911952 - 12911848
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    ||||||||| ||||||||| || ||||||||||||||||| | |||| |||||| ||  |||||||||| ||||||||||| |||||||||| |||||||    
T  12911952 aggtaagggttttttcccatacgtccatactaagtgctag-gttgtgttattaagtaaaggtagcaatttttgtcttttaaaaagaaaaataattaaaat 12911854  T
Q  857 gtattt 862  Q
    ||||||    
T  12911853 gtattt 12911848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 757 - 861
Target Start/End: Complemental strand, 10289430 - 10289325
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || |||||||||||||||||  |||||  ||||| || |||||| ||| |||||||| ||| |||||||| | ||||||    
T  10289430 aggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagtaatgcttgtcttctaaaaagaaaaacaattaaaa 10289331  T
Q  856 tgtatt 861  Q
    ||||||    
T  10289330 tgtatt 10289325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 757 - 855
Target Start/End: Complemental strand, 49170526 - 49170428
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    ||||||||| |||||||| | || ||||||||||||| ||  |||||| |||||| |||  ||||||||||||||||||||| |||||||||| ||||||    
T  49170526 aggtaagggttttttccccatacgtccatactaagtgttac-gctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 49170428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 755 - 835
Target Start/End: Original strand, 9993289 - 9993370
Alignment:
Q  755 taaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtctttt 835  Q
    |||||||||||||||||||| | || | | ||||||||||||| ||| || |||||||||| |||| |||||||||||||||    
T  9993289 taaggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtctttt 9993370  T

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Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 757 - 862
Target Start/End: Original strand, 40458906 - 40459011
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || |||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| |||||||||| ||||||    
T  40458906 aggtaagggctttttccccatacgtccatactaagtgctaga-ctgtgttattaagtagaggtagcaattcttgtcttttaaaaagaaaaataattaaaa 40459004  T
Q  856 tgtattt 862  Q
     ||||||    
T  40459005 cgtattt 40459011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 757 - 856
Target Start/End: Original strand, 69251 - 69350
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    ||||||||| ||||||||| || ||||||||||||| |||  ||||| |||||||||||||||||||||||||||| || | |||||||| | |||||||    
T  69251 aggtaagggttttttcccatacgtccatactaagtgttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaagaaaaacaattaaaat 69350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 780 - 862
Target Start/End: Original strand, 55162161 - 55162242
Alignment:
Q  780 tccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgtattt 862  Q
    |||||||||||||||||| ||||| |||||| |||  ||||||||||||||||||||| |||||||||| |||||| ||||||    
T  55162161 tccatactaagtgctaga-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtattt 55162242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 8e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 757 - 862
Target Start/End: Complemental strand, 43278485 - 43278380
Alignment:
Q  757 aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    |||||||||||||||| || || |||||| |||||| ||| ||||||  ||||||||||||||||||| |||||||| ||| |||||||||| |||||||    
T  43278485 aggtaagggctttttctcatacgtccatattaagtgttagggctgtgtcattaaatagtggtagcaatgcttgtcttataaaaagaaaaataattaaaat 43278386  T
Q  857 gtattt 862  Q
    ||||||    
T  43278385 gtattt 43278380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 743 - 856
Target Start/End: Complemental strand, 17542928 - 17542815
Alignment:
Q  743 ggaaaaacaccataaggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaaga 842  Q
    |||||| ||||||||||||||| ||||| |||| || | | ||||||||  |||  ||||| |||||||||||||||||||||||||||| || | ||||    
T  17542928 ggaaaagcaccataaggtaaggccttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga 17542829  T
Q  843 aaaatagttaaaat 856  Q
    |||| | |||||||    
T  17542828 aaaacaattaaaat 17542815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 786 - 891
Target Start/End: Original strand, 8730831 - 8730938
Alignment:
Q  786 ctaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgta---tttgagagtaaaatttaatcttt 882  Q
    ||||||||||| ||| || ||||||||||| || | |||||||||||||||| ||||||||||  |||||||||   ||| || ||||||||||||||||    
T  8730831 ctaagtgctagggctatgttattaaatagtagtggtaattcttgtcttttaaaaagaaaaata-ataaaatgtatattttcagggtaaaatttaatcttt 8730929  T
Q  883 tctaaaagt 891  Q
    | |||||||    
T  8730930 tataaaagt 8730938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 786 - 891
Target Start/End: Original strand, 9082718 - 9082825
Alignment:
Q  786 ctaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaatgta---tttgagagtaaaatttaatcttt 882  Q
    ||||||||||| ||| || ||||||||||| || | |||||||||||||||| ||||||||||  |||||||||   ||| || ||||||||||||||||    
T  9082718 ctaagtgctagggctatgttattaaatagtagtggtaattcttgtcttttaaaaagaaaaata-ataaaatgtatattttcagggtaaaatttaatcttt 9082816  T
Q  883 tctaaaagt 891  Q
    | |||||||    
T  9082817 tataaaagt 9082825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 757 - 861
Target Start/End: Complemental strand, 7337333 - 7337228
Alignment:
Q  757 aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaa 855  Q
    |||||||||||||||||| | || |||||||||||||||||  |||||  ||||| || |||||| ||| |||||||| ||| |||||||| | ||||||    
T  7337333 aggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtcttctaaaaagaaaaacaattaaaa 7337234  T
Q  856 tgtatt 861  Q
    ||||||    
T  7337233 tgtatt 7337228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 784 - 846
Target Start/End: Original strand, 9104202 - 9104264
Alignment:
Q  784 tactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaa 846  Q
    ||||||||| |||  ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  9104202 tactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaaaaa 9104264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 777 - 856
Target Start/End: Original strand, 24158897 - 24158975
Alignment:
Q  777 acatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 856  Q
    |||||||||||| ||||||| |||||  |||||| ||||||||||||||||||| ||| || |||||||| | |||||||    
T  24158897 acatccatactacgtgctagggctgtcttattaattagtggtagcaattcttgtatttgaa-aagaaaaacaattaaaat 24158975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 743 - 831
Target Start/End: Complemental strand, 2735 - 2645
Alignment:
Q  743 ggaaaaacacc-ataaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattcttgtc 831  Q
    ||||||||||| | ||||||||||||||||||| | || | | |||||||||||||  || || ||| |||||||||||| ||||||||||    
T  2735 ggaaaaacacccacaaggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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