View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-Insertion-26 (Length: 1041)
Name: NF0235-Insertion-26
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-26 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 529 - 963
Target Start/End: Original strand, 2845259 - 2845698
Alignment:
| Q |
529 |
atcagaaaaacttttacactatatcagctaactactagccaaaagatatggaaaagattttgaagagtcttaatcaaattatgatcacatttgtttctaa |
628 |
Q |
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| T |
2845259 |
atcagaaaaacttttacactatgtcagctaactactagccaaaagatatggaaaagattttgaag--tcttaatcaaattatgatcacatttgtttctaa |
2845356 |
T |
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| Q |
629 |
attg-------aggattacgagactaaacaggactctctaactccctataataactgcaacaatttcccattctattcccacattgacctttagggttcc |
721 |
Q |
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| T |
2845357 |
attgaggattgaggattacgagactaaacaggactctctaactccctataataactgcaacaatttcccattctattcccacattgacctttagggttca |
2845456 |
T |
|
| Q |
722 |
gcagccgcagagaatccaaattcgatataaatccatcgtaaactactttagagataacccaaacccgatataattctataatcatatattgtggtcgtcg |
821 |
Q |
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| T |
2845457 |
gcagccgcagagaatccaaatttgatataaatccatcgtaaactactttagagataacctaaacccgatataattctatcatcatatattgtggtcgtcg |
2845556 |
T |
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| Q |
822 |
cagataatccaaatctgatataaatatatcaaaaacttcagcccagtcgcaaaggatccaaatccgataaaattatctcatcgcataccacagtcgtaga |
921 |
Q |
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| T |
2845557 |
cagataatctaaatccgatataaatatatcaaaaactttagcccagtcgcaaaggatccaaatccgataaaattatctcatcgcataccacagtcgtaga |
2845656 |
T |
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| Q |
922 |
ggatccaaatccgatataaatatatatcaaaaacccatcttt |
963 |
Q |
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| T |
2845657 |
ggatccaaatccgatataaatatatatcaaaaacccatcttt |
2845698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 2844735 - 2845147
Alignment:
| Q |
14 |
ttgtgaaagtgtgttaggtgcagctgctcatttctaaacaaatatctataaaaaaccaaaagatcactcatttattggtatactgttatactacatcagt |
113 |
Q |
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| T |
2844735 |
ttgtggaagtgtgttaggtgcaactgctcatttttaaacaaatatcta--aaaaaccgaaagatcactcattcattggtatactgttatactacatcagt |
2844832 |
T |
|
| Q |
114 |
tttgacatgagattgcactataaaaaacattcactttagaattgagacgcaaagaagaaaagtttacactactaatattatactatacatcaagattagc |
213 |
Q |
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| T |
2844833 |
tttgacatgagattgcactataaaaaacattcactttagaattgagacgcaaagaagaaaagtttacactactaatattata---tacatctagattagc |
2844929 |
T |
|
| Q |
214 |
tacctaagcatgacacact--------------cttcattcatgaatctcatttatttaattgtctaactcaattgttaagtcaaacgctgaaaattcta |
299 |
Q |
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| T |
2844930 |
tacctaagcatgacatactagtactacatcagtcttcattcatgaatctcatttatttaattatctaactcaattgttaagtcaaacgctgaaaattcta |
2845029 |
T |
|
| Q |
300 |
agtgacaaaattgatttaagccaaaaactaaactatatatgaatagcaacttgttcaaacaatcatgaatttcgacattataacaacctgaatttagcag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
2845030 |
agtgacaaaattgatttaagccaaaaactaaactatatatgaatagcaacttgttcaaacaatcctgaatttcgacactataacaacctgaatttagcag |
2845129 |
T |
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| Q |
400 |
tggttatataattagttg |
417 |
Q |
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|||||||||||||||||| |
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| T |
2845130 |
tggttatataattagttg |
2845147 |
T |
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