View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-Insertion-31 (Length: 792)
Name: NF0235-Insertion-31
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 712; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Complemental strand, 29104851 - 29104079
Alignment:
| Q |
8 |
ctctgtcggatcctccagaacttctttctgttcttttgatggaggaacaccggaagaagatgatattcgcgctgcagaggattgtatctctgaagtcgaa |
107 |
Q |
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| T |
29104851 |
ctctgtcggatcctccagaacttctttctgttcttttgatggaggaacaccggaagaagatgatattcgcgctgcagaggattgtatctctgaagtcgaa |
29104752 |
T |
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| Q |
108 |
cgcatttcttccgatgctgtggatgatttgagaattattgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtga |
207 |
Q |
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| T |
29104751 |
cgcatttcttccgatgctgtggatgatttgagaattattgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtga |
29104652 |
T |
|
| Q |
208 |
gaaaatccatcgtcgatgaaggtatttataaactcgacgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaat |
307 |
Q |
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| T |
29104651 |
gaaaatccatcgtcgatgaaggtatttataaactcaacgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaat |
29104552 |
T |
|
| Q |
308 |
caacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaataat |
407 |
Q |
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| T |
29104551 |
caacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattcca-------- |
29104460 |
T |
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| Q |
408 |
tccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccgg |
507 |
Q |
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| T |
29104459 |
----tcaaagaagcttgttttgctgagatttctaaggatggagctattttacttttaagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccgg |
29104364 |
T |
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| Q |
508 |
agaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgttaaatc |
607 |
Q |
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| T |
29104363 |
agaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaacagcagtcgttaaatc |
29104264 |
T |
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| Q |
608 |
tcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggca |
707 |
Q |
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| T |
29104263 |
tcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggca |
29104164 |
T |
|
| Q |
708 |
aatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgaga |
792 |
Q |
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| T |
29104163 |
aatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgaga |
29104079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 27 - 790
Target Start/End: Complemental strand, 29090571 - 29089820
Alignment:
| Q |
27 |
acttctttctgttcttttgatggaggaacaccggaagaagatgatattcgcgctgcagaggattgtatctctgaagtcgaacgcatttcttccgatgctg |
126 |
Q |
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| T |
29090571 |
acttctttcggttcttttgatggtggaacactggaagacgacgatgatcacgatgcacaggattgtatctctgaagttgaacgcgtttcttccgatgtgg |
29090472 |
T |
|
| Q |
127 |
tggatgatttgagaattattgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtgagaaaatccatcgtcgatga |
226 |
Q |
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| T |
29090471 |
tggatgatttgaaaattattgccgagtgcatggtttctaacggttacggaaaagagtgtgtaaacgtttacaccacggttagaaaatcgattgttgatga |
29090372 |
T |
|
| Q |
227 |
aggtatttataaactcgacgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcg |
326 |
Q |
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|||| |||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
29090371 |
aggtgtttacaaactcaatgtggaggaacgaagtttctcgaaggggaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggca |
29090272 |
T |
|
| Q |
327 |
gttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgtt |
426 |
Q |
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| T |
29090271 |
gttaagatctcagtgagaacactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaattcc------------atcagagaagcttgtt |
29090184 |
T |
|
| Q |
427 |
ttgctgagatttctaaga-atggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgc |
525 |
Q |
| |
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||| ||| ||||| |||| ||||||||| | | || || ||||||||||| ||||||| ||||||||||||| | |||||||||||||| || |||| |
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| T |
29090183 |
ttggtgaaatttc-aagagatggagctactcttctcttacgatttcctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgc |
29090085 |
T |
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| Q |
526 |
ttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgca |
625 |
Q |
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| T |
29090084 |
ttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgttaaatctcaagcatataattcaca |
29089985 |
T |
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| Q |
626 |
acatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcat |
725 |
Q |
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||| || | | || | |||| ||||| || | | ||||| ||||| |||| ||||||| ||||||||||| ||| ||||||||||| ||||| |
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| T |
29089984 |
acaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcat |
29089885 |
T |
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| Q |
726 |
tccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctga |
790 |
Q |
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||||| |||| | |||||||||| ||||| | | ||| ||||||||||||||||||| ||||| |
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| T |
29089884 |
tcccttacaacgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttctga |
29089820 |
T |
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