View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-Insertion-32 (Length: 1028)

Name: NF0235-Insertion-32
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-Insertion-32
NF0235-Insertion-32
[»] chr5 (10 HSPs)
chr5 (7-689)||(7662433-7663115)
chr5 (78-401)||(7660123-7660463)
chr5 (776-881)||(18172229-18172334)
chr5 (775-856)||(7662272-7662353)
chr5 (776-881)||(1081982-1082086)
chr5 (878-973)||(18172153-18172250)
chr5 (880-973)||(2786706-2786801)
chr5 (896-973)||(1081906-1081985)
chr5 (787-881)||(2786631-2786725)
chr5 (776-817)||(6427172-6427213)
[»] chr4 (17 HSPs)
chr4 (776-881)||(52789283-52789388)
chr4 (776-881)||(54703525-54703630)
chr4 (776-876)||(52032782-52032882)
chr4 (776-881)||(34939453-34939558)
chr4 (776-869)||(36046998-36047091)
chr4 (776-881)||(33985543-33985649)
chr4 (776-856)||(47020004-47020084)
chr4 (776-836)||(51242740-51242800)
chr4 (880-973)||(34939377-34939472)
chr4 (776-817)||(21713323-21713364)
chr4 (776-817)||(31825887-31825928)
chr4 (890-973)||(43502303-43502388)
chr4 (880-973)||(37694530-37694625)
chr4 (776-817)||(27758801-27758842)
chr4 (776-817)||(45865023-45865064)
chr4 (910-973)||(52789399-52789464)
chr4 (910-973)||(54809022-54809087)
[»] chr1 (10 HSPs)
chr1 (776-881)||(10308361-10308466)
chr1 (776-881)||(12926715-12926820)
chr1 (776-881)||(33686638-33686743)
chr1 (880-973)||(7014792-7014887)
chr1 (880-973)||(33686562-33686657)
chr1 (776-817)||(46923665-46923706)
chr1 (776-816)||(48569434-48569474)
chr1 (776-817)||(18169182-18169223)
chr1 (776-817)||(30308266-30308307)
chr1 (776-817)||(39222590-39222631)
[»] chr7 (5 HSPs)
chr7 (775-881)||(4035246-4035352)
chr7 (910-973)||(4035170-4035235)
chr7 (776-876)||(39283877-39283977)
chr7 (776-817)||(23943798-23943839)
chr7 (776-817)||(39476416-39476457)
[»] chr8 (10 HSPs)
chr8 (776-881)||(15743283-15743388)
chr8 (776-881)||(35161495-35161600)
chr8 (779-881)||(4322587-4322689)
chr8 (776-881)||(1217679-1217784)
chr8 (776-881)||(4759302-4759407)
chr8 (880-949)||(15743233-15743302)
chr8 (880-973)||(1217765-1217860)
chr8 (880-973)||(4759226-4759321)
chr8 (880-977)||(35161581-35161679)
chr8 (776-817)||(43693723-43693764)
[»] chr2 (11 HSPs)
chr2 (776-881)||(41192477-41192582)
chr2 (797-881)||(1887827-1887911)
chr2 (777-881)||(4616732-4616836)
chr2 (776-856)||(34620001-34620081)
chr2 (776-881)||(5814630-5814735)
chr2 (776-875)||(21083656-21083755)
chr2 (896-973)||(41192401-41192480)
chr2 (880-973)||(4616656-4616751)
chr2 (775-817)||(43837506-43837548)
chr2 (878-973)||(1887890-1887987)
chr2 (776-817)||(42242110-42242151)
[»] chr3 (6 HSPs)
chr3 (776-856)||(2447533-2447613)
chr3 (882-973)||(41649922-41650015)
chr3 (880-948)||(49742144-49742212)
chr3 (776-875)||(23029535-23029634)
chr3 (880-973)||(49501550-49501645)
chr3 (775-817)||(37280602-37280644)
[»] chr6 (5 HSPs)
chr6 (776-881)||(30634209-30634314)
chr6 (775-881)||(11598906-11599012)
chr6 (880-973)||(11598993-11599088)
chr6 (880-973)||(3515236-3515331)
chr6 (834-875)||(1077578-1077619)
[»] scaffold0051 (1 HSPs)
scaffold0051 (882-973)||(20069-20162)


Alignment Details
Target: chr5 (Bit Score: 630; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 7 - 689
Target Start/End: Complemental strand, 7663115 - 7662433
Alignment:
Q  7 aaaaagaatatactatactataatattatctcattagcatttttaacaaaacatttatccttgttccattaatttttcttggttgtttctaaatttgtaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7663115 aaaaagaatatactatactataatattatctcattagcatttttaacaaaacatttatccttgttccattaatttttcttggttgtttctaaatttgtaa 7663016  T
Q  107 gttgatggaatttagaaaaagtgttaggttgtcaagatcagaaggtatattactatcatcagaatctgtaacttcagaatgtgctaaagttggtggttat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7663015 gttgatggaatttagaaaaagtgttaggttgtcaagatcagaaggtatattactatcatcagaatctgtaacttcagaatgtgctaaagttggtggttat 7662916  T
Q  207 gaaagactctcacaaaccatggagataaatgaagaatatgaagacaagaagaataaaagaggtattggatttctaagtaaagtcttaaatttaacgagaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7662915 gaaagactctcacaaaccatggagataaatgaagaatatgaacacaagaagaataaaagaggtattggatttctaaataaagtcttaaatttaacgagaa 7662816  T
Q  307 tttccagtccccacgaggcggcggagaagaaggagaagaaacgttcgtcttggcttccagatccacaaaaacgttggccagttcaagggtggtgactgan 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7662815 tttccagtccccacgaggcggcggagaagaaggagaagaaacgttcgtcttggcttccagatccacaaaaacgttggccagttcaagggtggtgactgat 7662716  T
Q  407 nnnnnngtgtattttattatggtttgttttcaagtttcagaacgtgattgagtttgtaatcacgttgttctcttaattcgttgctgattttgtatattta 506  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7662715 ttttttgtgtattttattatggtttgttttcaagtttcagaacgtgattgagtttgtaatcacgttgttctcttaattcgttgctgattttgtaaattta 7662616  T
Q  507 ttttgcttagatgtgaatattcttaagctaaggttcataaacattgaactgtgattaattcaggaaaattatctattagcatttgcttgcaaaatcaact 606  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7662615 ttttgtttagatgtgaatattcttaagctaaggttcatgaacattgaactgtgattaattcaggaaaattatctattagcatttgcttacaaaatcaact 7662516  T
Q  607 tgtatatgaggtgaatatgtgttaaaagaatcacatgttagatgagagatggcgtgaacaattgtatttgtttataagtaagg 689  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7662515 tgtatatgaggtgaatatgtgttaaaagaatcgcatgttagatgagagatggcgtgaacaattgtatttgttcataagtaagg 7662433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 78 - 401
Target Start/End: Complemental strand, 7660463 - 7660123
Alignment:
Q  78 atttttcttggttgtttctaaatttgtaagttgatggaatttagaaaaagtgttaggttgtcaagatcagaaggtatattactatcatcagaatctgtaa 177  Q
    |||| |||| ||||||||| |||||| ||| ||||||||||| ||| |||| |||| || |||||||||||| | |||||||| |||||||||||  |||    
T  7660463 atttatctttgttgtttctcaatttg-aagctgatggaatttggaagaagttttagattatcaagatcagaacgcatattactttcatcagaatcaataa 7660365  T
Q  178 cttcagaatgtgctaaagttggtggttatgaaagactctcacaaaccatggagataaatgaagaatatgaagacaagaagaataaaagaggtattggatt 277  Q
    ||||||||||||||||| ||  ||| |||||||||||||||||| |||||  | ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  7660364 cttcagaatgtgctaaaatttctggatatgaaagactctcacaatccatgaggctaagtgaagaatatgaacacaagaagaataaaagaggtattggatt 7660265  T
Q  278 tctaagtaaagtcttaaatttaacgagaatttccagtcccc---------acgaggcggcgga---------gaagaaggagaagaaacgttcgtcttgg 359  Q
    | ||| ||||||||||| ||| |  |||||||| | |||||         ||| ||||| |||         ||||||||||||||||||||| ||||||    
T  7660264 tataactaaagtcttaagttttagaagaatttctactccccatgaagggaacgtggcggtggagttggctgcgaagaaggagaagaaacgttcttcttgg 7660165  T
Q  360 cttccagatccacaaaaacgttggccagttcaagggtggtga 401  Q
    |||||||||||| | || ||||||||| ||||||||||||||    
T  7660164 cttccagatccaaacaatcgttggccaattcaagggtggtga 7660123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 18172334 - 18172229
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| |||||| || |||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  18172334 gaattttgctcttcaccttgcacattttgttcgcgccctgcacattttttaaatatgaccttgcgtgagttaagtcacgcagtgtcacttaacacacgca 18172235  T
Q  876 catcac 881  Q
    ||||||    
T  18172234 catcac 18172229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 775 - 856
Target Start/End: Complemental strand, 7662353 - 7662272
Alignment:
Q  775 cgaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgca 856  Q
    ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7662353 cgaattctgctcttcatcctgaacattttactcgcgccctgcacatttttcaaatatgaccttgcgtgagttaagtcacgca 7662272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 1082086 - 1081982
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| ||||||||| |||||||| ||||||||||||| |||| ||||| ||||| |||||| ||||||||||||||||  ||||||| ||||||    
T  1082086 gaattctgctattcaccctgcacattttg-tcgcgccctgcactttttccaaatttgaccctgtgtgagttaagtcacgcagcgagacttaactcacgca 1081988  T
Q  876 catcac 881  Q
    | ||||    
T  1081987 cctcac 1081982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 878 - 973
Target Start/End: Complemental strand, 18172250 - 18172153
Alignment:
Q  878 tcacttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| |||||||  || |||||||||||| ||||| || |||||| |||||||||||    
T  18172250 tcacttaacacacgcacatcacaagctctgcgtgacttaagtcacgcaccactgagcttatgcgcgagttaacttgcgcaagttggtcggtggtaaaa 18172153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 880 - 973
Target Start/End: Original strand, 2786706 - 2786801
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||  |||||||  ||||||||||||||| ||||| || ||||||||||||||||||    
T  2786706 acttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaa 2786801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 896 - 973
Target Start/End: Complemental strand, 1081985 - 1081906
Alignment:
Q  896 tcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    |||||||| |||  ||||||||||||| |||||||  ||||||||||||||| ||||| || ||||| ||||||||||||    
T  1081985 tcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaa 1081906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 787 - 881
Target Start/End: Original strand, 2786631 - 2786725
Alignment:
Q  787 ttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgcacatcac 881  Q
    ||||||||| ||||||||||||||| ||||||  ||| ||||||  ||| || ||| |||||||| |||| ||  ||||||| ||||||| ||||    
T  2786631 ttcaccctgcacattttgctcgcgctctgcactctttccaaatacaaccctgcgtgagttaagtcgcgcaacgagacttaactcacgcacctcac 2786725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 6427172 - 6427213
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    ||||||||||||||| |||| | |||||||||||||||||||    
T  6427172 gaattctgcttttcatcctgcatattttgctcgcgccctgca 6427213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 776 - 881
Target Start/End: Original strand, 52789283 - 52789388
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||| ||| ||||||||| | ||||||||||||||||||||    
T  52789283 gaattctgcttttcacccagaacatttcgctcgcgccctgcacattttttaaatatgatcttgcgtgagttaagtcaagtagcgtcacttaacacacgca 52789382  T
Q  876 catcac 881  Q
    | ||||    
T  52789383 cctcac 52789388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 776 - 881
Target Start/End: Original strand, 54703525 - 54703630
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||| || ||| ||||||| ||||||||  |||||||| |||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgccctgcacttttttcaaatataaccctgcgtgagttaagtaacgcagcgagacttaacatacgca 54703624  T
Q  876 catcac 881  Q
    | ||||    
T  54703625 cctcac 54703630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 776 - 876
Target Start/End: Complemental strand, 52032882 - 52032782
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| ||||||||| ||||||| |||||||| ||||| |||||||||| ||||| || ||| ||||||||||||||||  ||||||| ||||||    
T  52032882 gaattctgctcttcaccctgcacattttactcgcgccttgcacttttttcaaatttgaccctgcgtgagttaagtcacgcagcgagacttaactcacgca 52032783  T
Q  876 c 876  Q
    |    
T  52032782 c 52032782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 34939558 - 34939453
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| ||||| | | |||||| ||||||||||||||   ||||||||||||||| || ||| ||||||||||| ||||| ||||||||||||||    
T  34939558 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgattttcaaatatgaccctgcgtgagttaagtcacgtagcgtgacttaacacacgca 34939459  T
Q  876 catcac 881  Q
    | ||||    
T  34939458 cctcac 34939453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 776 - 869
Target Start/End: Complemental strand, 36047091 - 36046998
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaaca 869  Q
    |||||||||| ||||||||| |||||||||| ||||||||||| |||||| ||||| ||| || ||| ||||||| ||||||||  ||||||||    
T  36047091 gaattctgctcttcaccctgcacattttgcttgcgccctgcacttttttcgaatataaccctgcgtgagttaagtaacgcagcgagacttaaca 36046998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 33985649 - 33985543
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcg-ccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgc 874  Q
    |||||||||| |||| || | |||||||||||||  |||||||||||||||||||||  | ||||||| ||||||||||||| |||   ||||| |||||    
T  33985649 gaattctgctcttcatccagcacattttgctcgcatccctgcacatttttcaaatatacctttgtgtgagttaagtcacgcaacgtggtttaactcacgc 33985550  T
Q  875 acatcac 881  Q
    || ||||    
T  33985549 acctcac 33985543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 776 - 856
Target Start/End: Original strand, 47020004 - 47020084
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgca 856  Q
    ||||| |||| ||||||| | |||||| ||||||||||||||  |||| ||||||| |||||| ||| |||||||||||||    
T  47020004 gaattttgctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 47020084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 776 - 836
Target Start/End: Original strand, 51242740 - 51242800
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgacct 836  Q
    |||||||||||||||||||  |||||||||||||||||||  | |||||||||||| ||||    
T  51242740 gaattctgcttttcaccctacacattttgctcgcgccctgtgcttttttcaaatataacct 51242800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 34939472 - 34939377
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||||||||||| |||||||| |||  ||||||| ||||| || ||||  ||||||||||||||| ||||  || ||||||||||||||||||    
T  34939472 acttaacacacgcacctcacaagctctgcatgacttatgtcacgcaacactgagcctatgcgcgagttaacttccgcaagttggccggtggtaaaa 34939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 776 - 817
Target Start/End: Complemental strand, 21713364 - 21713323
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccctgca 21713323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 776 - 817
Target Start/End: Complemental strand, 31825928 - 31825887
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgccctgca 31825887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 890 - 973
Target Start/End: Complemental strand, 43502388 - 43502303
Alignment:
Q  890 cgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||| |||||||| |||  ||||||||||| | |||||||  ||||||||||||||| ||||| || ||||||||||||||||||    
T  43502388 cgcacctcacaagctctgcgtgacttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaa 43502303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 37694625 - 37694530
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||| |||||||  |||| | |||||||| || || || ||||||||||||||||||    
T  37694625 acttaactcacgcacctcacaagctctgcatgacttaagtcacgcaccactgagcctctacgcgagttaacctgcgcaagttggccggtggtaaaa 37694530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 27758801 - 27758842
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  27758801 gaattctgctattcaccttgtacattttgctcgcgccctgca 27758842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Complemental strand, 45865064 - 45865023
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| | ||||||| |||||||||||||||||||||    
T  45865064 gaattctgctatccaccctgcacattttgctcgcgccctgca 45865023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 910 - 973
Target Start/End: Original strand, 52789399 - 52789464
Alignment:
Q  910 tgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||||||||| |||||||  ||||||||||||||| ||||| || |||||| |||||||||||    
T  52789399 tgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaa 52789464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 910 - 973
Target Start/End: Complemental strand, 54809087 - 54809022
Alignment:
Q  910 tgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||||||| | |||||||  ||||||||||||||| ||||| || ||||||||||||||||||    
T  54809087 tgacttaagtcgcacaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaa 54809022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 776 - 881
Target Start/End: Original strand, 10308361 - 10308466
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||  |||||| ||| || ||| ||||||||||||||||  ||||||| ||||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgca 10308460  T
Q  876 catcac 881  Q
    | ||||    
T  10308461 cctcac 10308466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 776 - 881
Target Start/End: Original strand, 12926715 - 12926820
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| ||||||||| ||||||||||| |||||||||| |||| ||||||| ||| || ||| ||||||||||||||||  ||||||| || |||    
T  12926715 gaattttgctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgca 12926814  T
Q  876 catcac 881  Q
    | ||||    
T  12926815 cctcac 12926820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 33686743 - 33686638
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| |||| |||| |||||||||||||| ||||||| |||| ||||||| |   || ||| ||||||||||||||||  ||||||| ||||||    
T  33686743 gaattctgctcttcatcctgcacattttgctcgcgtcctgcactttttccaaatataattctgcgtgagttaagtcacgcagcgagacttaactcacgca 33686644  T
Q  876 catcac 881  Q
    | ||||    
T  33686643 cctcac 33686638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 7014887 - 7014792
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| |||||||| ||   ||||||||||||| |||||||| || |||||||||||| ||||| || ||||||||||||||||||    
T  7014887 acttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactaagcatatgcgcgagttaacttgcgcaagttggccggtggtaaaa 7014792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 33686657 - 33686562
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtg-cagttggccggtggtaaaa 973  Q
    ||||||| ||||||| ||||||||  ||  ||||||||||||| |||||||  ||||||||||||||| ||||| |  ||||||||||||||||||    
T  33686657 acttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgtaagttggccggtggtaaaa 33686562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 46923665 - 46923706
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  46923665 gaattctgctcttcaccctgcacattttgctcgcgccctgca 46923706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 816
Target Start/End: Complemental strand, 48569474 - 48569434
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgc 816  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  48569474 gaattctgctcttcaccctgcacattttgctcgcgccctgc 48569434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 18169182 - 18169223
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| ||||||||| ||||||||||||| |||||||    
T  18169182 gaattctgctcttcaccctgcacattttgctcgcaccctgca 18169223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 30308266 - 30308307
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||| ||| ||||||||| |||||||||||||||||||||    
T  30308266 gaattcagctcttcaccctgcacattttgctcgcgccctgca 30308307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 39222590 - 39222631
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  39222590 gaattttgctcttcaccctgcacattttgctcgcgccctgca 39222631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 775 - 881
Target Start/End: Complemental strand, 4035352 - 4035246
Alignment:
Q  775 cgaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgc 874  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||| ||| || ||| ||||||||||||||||  ||||||| || ||    
T  4035352 cgaattctgctcttcaccctgcacattttgctcgcgccctacacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgc 4035253  T
Q  875 acatcac 881  Q
    || ||||    
T  4035252 acctcac 4035246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 910 - 973
Target Start/End: Complemental strand, 4035235 - 4035170
Alignment:
Q  910 tgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||||||||| |||||||  ||||||||||||||| ||||| || ||||||||||||||||||    
T  4035235 tgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaa 4035170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 876
Target Start/End: Original strand, 39283877 - 39283977
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| ||||||| | |||||| ||| ||||||||||  ||||  |||||| ||| || ||| |||||||||||||||||  |||||| ||||||    
T  39283877 gaattttgctcttcacccagcacatttcgcttgcgccctgcatgttttcaaaatataaccatgcgtgagttaagtcacgcagcgtggcttaactcacgca 39283976  T
Q  876 c 876  Q
    |    
T  39283977 c 39283977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Complemental strand, 23943839 - 23943798
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| ||||||||| ||||||||||||||| |||||    
T  23943839 gaattctgctcttcaccctgcacattttgctcgcgctctgca 23943798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Original strand, 39476416 - 39476457
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||||||||| ||||||||| |||||||||||||||| ||||    
T  39476416 gaattctgctcttcaccctgcacattttgctcgcgccttgca 39476457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 15743388 - 15743283
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||| | | |||||| |||||||||||||||   ||||||| ||||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataatcctgtgtgagttaagtcacgcagcaagacttaactcacgca 15743289  T
Q  876 catcac 881  Q
    | ||||    
T  15743288 cctcac 15743283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 776 - 881
Target Start/End: Original strand, 35161495 - 35161600
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||| ||| || ||| ||||||||| ||||||  ||||||||||| ||    
T  35161495 gaattctactcttcaccctgcacattttgctcgcgccctgcactttttttaaatataaccatgcgtgagttaagtcatgcagcgagacttaacacaccca 35161594  T
Q  876 catcac 881  Q
    | ||||    
T  35161595 cctcac 35161600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 779 - 881
Target Start/End: Original strand, 4322587 - 4322689
Alignment:
Q  779 ttctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgcacat 878  Q
    ||||||| ||||| ||| |||||||||||||||||||||| ||||| |||||| | | |||||| ||||| ||||||||||  ||||||| ||||||| |    
T  4322587 ttctgctcttcactctgcacattttgctcgcgccctgcactttttttaaatataatcctgtgtgagttaactcacgcagcgagacttaactcacgcacct 4322686  T
Q  879 cac 881  Q
    |||    
T  4322687 cac 4322689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 881
Target Start/End: Original strand, 1217679 - 1217784
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| ||||| | | |||||| ||||||||||||||  |||| ||||||| ||| |||||| |||||||||||  |||| ||||||| ||||||    
T  1217679 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgttttccaaatataaccctgtgtgagttaagtcacgttgcgtgacttaactcacgca 1217778  T
Q  876 catcac 881  Q
    | ||||    
T  1217779 cctcac 1217784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 4759407 - 4759302
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| ||||||  | |||||||||||||||||  ||  |||||||||||| ||| || ||  ||||||||||||| ||| ||||||||||||||    
T  4759407 gaattttgctcttcacctagcacattttgctcgcgcccaacatgtttttcaaatataaccctgcgtaagttaagtcacgcaacgtgacttaacacacgca 4759308  T
Q  876 catcac 881  Q
    | ||||    
T  4759307 cctcac 4759302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 880 - 949
Target Start/End: Complemental strand, 15743302 - 15743233
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagttac 949  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||| |||||||  |||||||||||||||||    
T  15743302 acttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttac 15743233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 973
Target Start/End: Original strand, 1217765 - 1217860
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| ||||||||  ||| ||||||||||||| ||||||   |||| |||||||||| ||||| || ||||||||||||||||||    
T  1217765 acttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccaccgagcctctgcgcgagttgacttgcgcaagttggccggtggtaaaa 1217860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 4759321 - 4759226
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||||||||||| |||||||| |||  ||||||||||||  |||||||  |||| |||||||||| ||||| || |||||| |||||||||||    
T  4759321 acttaacacacgcacctcacaagctctgcgtgacttaagtcatgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaa 4759226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 977
Target Start/End: Original strand, 35161581 - 35161679
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaactga 977  Q
    ||||||||||| ||| |||||||| |||  ||||||| ||||| |||||||  ||||||||||||||| ||||| || ||||| ||||||||||||||||    
T  35161581 acttaacacacccacctcacaagctctgcgtgactta-gtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaactga 35161679  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Complemental strand, 43693764 - 43693723
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgccctgca 43693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 41192582 - 41192477
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| ||||||||| |||||||| ||||||||||||| |||| ||||||| ||| || ||| ||||||||||||||||  ||||||| ||||||    
T  41192582 gaattctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgca 41192483  T
Q  876 catcac 881  Q
    | ||||    
T  41192482 cctcac 41192477  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 797 - 881
Target Start/End: Original strand, 1887827 - 1887911
Alignment:
Q  797 acattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgcacatcac 881  Q
    |||||| ||||| ||| |||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||| ||||    
T  1887827 acatttcgctcgagccttgcacatttttcaaatatgatcttgcgtgagttaagtcacgcaacgtcacttaacacacgcacctcac 1887911  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 777 - 881
Target Start/End: Complemental strand, 4616836 - 4616732
Alignment:
Q  777 aattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgcac 876  Q
    |||| |||||||||||| | |||||| ||||||||||||||  |||||||||||| ||| |||||| |||||||||||| | || ||||||| |||||||    
T  4616836 aattttgcttttcacccagcacatttcgctcgcgccctgcatgtttttcaaatataaccatgtgtgagttaagtcacgctgtgtgacttaactcacgcac 4616737  T
Q  877 atcac 881  Q
     ||||    
T  4616736 ttcac 4616732  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 776 - 856
Target Start/End: Complemental strand, 34620081 - 34620001
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgca 856  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||| ||| || ||| |||||||||||||    
T  34620081 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 34620001  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 5814735 - 5814630
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| ||||||| |||||  |||||||| | ||||||||||| |||||||||||| ||| || ||| ||||||||||||||||  ||||||| ||||||    
T  5814735 gaattttgctttttaccctacacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgca 5814636  T
Q  876 catcac 881  Q
    | ||||    
T  5814635 cctcac 5814630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 776 - 875
Target Start/End: Original strand, 21083656 - 21083755
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    |||||||||| |||| |||| | |||||||| ||||||| |||||||||||||||| ||| || ||| |||||||||||||| |  ||||||| ||||||    
T  21083656 gaattctgctattcatcctgcatattttgcttgcgccctacacatttttcaaatataaccctgcgtgagttaagtcacgcagtgagacttaactcacgca 21083755  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 896 - 973
Target Start/End: Complemental strand, 41192480 - 41192401
Alignment:
Q  896 tcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    |||||||| |||| ||||||||||||| |||||||  ||||||| ||||||| ||||| || ||||||||||||||||||    
T  41192480 tcacaagctctgtgtgacttaagtcacacaccactgagcctatgtgcgagttaacttgcgcaagttggccggtggtaaaa 41192401  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 4616751 - 4616656
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||| | |||||  |||| | |||||||| ||||| || ||||||||||||||||||    
T  4616751 acttaactcacgcacttcacaagctctgcgtgacttaagtcacgccccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaa 4616656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 775 - 817
Target Start/End: Original strand, 43837506 - 43837548
Alignment:
Q  775 cgaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  43837506 cgaatactgctcttcaccctgcacattttgctcgcgccctgca 43837548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 973
Target Start/End: Original strand, 1887890 - 1887987
Alignment:
Q  878 tcacttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||||||||||||| |||||||| |||  ||||||||||||| | | |||   | |||||||||||| ||||| || ||||| ||||||||||||    
T  1887890 tcacttaacacacgcacctcacaagctctgcgtgacttaagtcacgcccaactgatcatatgcgcgagttaacttgcgcaagttgcccggtggtaaaa 1887987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 817
Target Start/End: Complemental strand, 42242151 - 42242110
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  42242151 gaatactgctcttcaccctgcacattttgctcgcgccctgca 42242110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 776 - 856
Target Start/End: Original strand, 2447533 - 2447613
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgca 856  Q
    |||||||||| |||||| || |||||||||||| ||||||||| |||||||||| ||||| |||||| |||||||||||||    
T  2447533 gaattctgctcttcaccttgcacattttgctcgtgccctgcacttttttcaaatttgaccctgtgtgagttaagtcacgca 2447613  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 882 - 973
Target Start/End: Original strand, 41649922 - 41650015
Alignment:
Q  882 ttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||| ||| ||| |||||||| |||| ||||||||||||| ||| |||  ||||||||||||||| | ||| || ||||||||||||||||||    
T  41649922 ttaactcacacacctcacaagctctgtgtgacttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagttggccggtggtaaaa 41650015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 948
Target Start/End: Complemental strand, 49742212 - 49742144
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtta 948  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||| |||||||  | ||||||||||||||    
T  49742212 acttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagtctatgcgcgagtta 49742144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 875
Target Start/End: Original strand, 23029535 - 23029634
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||||||| ||||||| || |||||||||||||||||||||    |  |||| ||| ||||| |   ||||||||||||||||| ||||||| ||||||    
T  23029535 gaattctgcatttcaccttgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgca 23029634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 49501645 - 49501550
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||| |||||||  || |||||| ||||| ||||| || |||||| |||||||||||    
T  49501645 acttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcttatgcgtgagttaacttgcgcaagttggtcggtggtaaaa 49501550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 775 - 817
Target Start/End: Original strand, 37280602 - 37280644
Alignment:
Q  775 cgaattctgcttttcaccctgaacattttgctcgcgccctgca 817  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||    
T  37280602 cgaattctgctcttcaccctgcacattctgctcgcgccctgca 37280644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 776 - 881
Target Start/End: Complemental strand, 30634314 - 30634209
Alignment:
Q  776 gaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||| |||| |||||||   |||||| |||||||||||||||||||| ||||||| ||| || ||| ||||||||||||||||  ||||||| ||||||    
T  30634314 gaattttgctcttcacccaatacatttcgctcgcgccctgcacattttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgca 30634215  T
Q  876 catcac 881  Q
    | ||||    
T  30634214 cctcac 30634209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 775 - 881
Target Start/End: Original strand, 11598906 - 11599012
Alignment:
Q  775 cgaattctgcttttcaccctgaacattttgctcgcgccctgcacatttttcaaatatgaccttgtgtgggttaagtcacgcagcgtcacttaacacacgc 874  Q
    |||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||| ||| || ||| ||||| |||| | |||  ||||||| |||||    
T  11598906 cgaattttgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaactcacaccgcgagacttaactcacgc 11599005  T
Q  875 acatcac 881  Q
    || ||||    
T  11599006 acctcac 11599012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 973
Target Start/End: Original strand, 11598993 - 11599088
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| |||||||| |||  ||||||||||||  ||||||   ||||||||||||||| ||||| || ||||||||||||||||||    
T  11598993 acttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccaccgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaa 11599088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 973
Target Start/End: Complemental strand, 3515331 - 3515236
Alignment:
Q  880 acttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||||| ||||||| ||||||||  ||  ||||||||||||| |||||||  |||| | |||||||| ||||| || ||||||||||||||||||    
T  3515331 acttaactcacgcacttcacaagctttgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaa 3515236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 875
Target Start/End: Original strand, 1077578 - 1077619
Alignment:
Q  834 ccttgtgtgggttaagtcacgcagcgtcacttaacacacgca 875  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||    
T  1077578 ccttgtgtgagttaagtcacgcagcgtaacttaactcacgca 1077619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 882 - 973
Target Start/End: Original strand, 20069 - 20162
Alignment:
Q  882 ttaacacacgcacatcacaagccctgtttgacttaagtcacccaccactaggcctatgcgcgagtt-acttgtgc-agttggccggtggtaaaa 973  Q
    ||||| ||||||| ||||||||  ||  ||||||||||||| |||||||  ||||||||||||||| ||||| || ||||||||||||||||||    
T  20069 ttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaa 20162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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