View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235-Insertion-33 (Length: 1024)

Name: NF0235-Insertion-33
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235-Insertion-33
NF0235-Insertion-33
[»] chr6 (6 HSPs)
chr6 (8-831)||(13328531-13329358)
chr6 (510-588)||(1217504-1217586)
chr6 (781-944)||(13357744-13357909)
chr6 (588-669)||(13357276-13357357)
chr6 (648-723)||(13377593-13377668)
chr6 (781-830)||(13377394-13377443)
[»] chr1 (4 HSPs)
chr1 (458-587)||(25713113-25713242)
chr1 (491-587)||(52964408-52964503)
chr1 (488-587)||(52961303-52961401)
chr1 (489-588)||(18416188-18416285)
[»] chr2 (3 HSPs)
chr2 (452-582)||(30701252-30701382)
chr2 (503-587)||(30701463-30701547)
chr2 (514-582)||(30701394-30701462)
[»] chr8 (2 HSPs)
chr8 (491-588)||(37001062-37001158)
chr8 (511-587)||(36996983-36997056)
[»] chr7 (1 HSPs)
chr7 (488-588)||(37625134-37625233)
[»] chr4 (4 HSPs)
chr4 (489-590)||(33831136-33831235)
chr4 (489-587)||(37920552-37920648)
chr4 (489-588)||(33835073-33835170)
chr4 (546-588)||(37915378-37915420)
[»] chr5 (2 HSPs)
chr5 (489-587)||(8081382-8081479)
chr5 (507-587)||(30589118-30589198)


Alignment Details
Target: chr6 (Bit Score: 596; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 8 - 831
Target Start/End: Original strand, 13328531 - 13329358
Alignment:
Q  8 aaacgtattctaaagttgcagaaacagtgagccaacacaagagcgaacgcagctgatgcgcaaaagccattaaaatgcacctcaaatgtgggacccaaaa 107  Q
    ||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  13328531 aaacgtagtcaaaagttgcagaaacagcgagccaacacaagaacgaacgcagctgatgcggaaaagccactaaaacgcacctcaaatgtgggacccaaaa 13328630  T
Q  108 actggaaggggtccaaaaagaaccaagaaggtaaaatgagtcagatgagacaaaccgcggtggaaggtgatgcacagagggtggcgcgtgtactccacaa 207  Q
    |||||||||||||||||| ||||||||||||  ||| ||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||     
T  13328631 actggaaggggtccaaaatgaaccaagaaggggaaacgagtcagatgagaaaaaccgcggcggaaggtgatgcccagagggtggcgtgtgtactccacac 13328730  T
Q  208 gccgataattatctaatgtgatggcggcgtgtgtc------tgta-----attggcagtggcgttttaggtgttgataggtcgacgacctttggtgctta 296  Q
    | ||||||||| |||||||||||||||||||||||      ||||     | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  13328731 gtcgataattacctaatgtgatggcggcgtgtgtcgacacgtgtatctataattgcagtggcgttttaggtgttgataggtcgacgacctttggtgctta 13328830  T
Q  297 tggtagggcgcgtgtttaaaatagacccacatgaaacttcgccggcgacggcggtgctgtcgctatttcaaagtaaacaacaaacaatcatattcttcta 396  Q
    ||||||||||||||||||| ||| || |  |||||||||||||||||||          |  ||||||||||||| ||||||||||| ||||  ||||||    
T  13328831 tggtagggcgcgtgtttaatataaactctgatgaaacttcgccggcgacaa--------taactatttcaaagtagacaacaaacaagcataaacttcta 13328922  T
Q  397 gggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactggtacctacttgaataatttaaattgaataattcattcattacaatg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  13328923 gggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactggtaccaacttgaataatttaaattgaataactcattcattacaatg 13329022  T
Q  497 atgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaacacataccaac 596  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13329023 acgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaacacataccaac 13329122  T
Q  597 aagagtcttgtttcaaggccttttattgcagagaatagtttatttagctgttgaatgacctttcgatatgttactgcactttgaacttgaacttttcttc 696  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13329123 aagagtcttatttcaaggccttttattgcagagaatagtttatttagctgttgaatgacctttggatatgttactgcactttgaacttgaacttttcttc 13329222  T
Q  697 aaataagagaggactaaagtgcagggattcacaaaacttgaatatggtatgctgcggta-tttgttacttttcattatcccctccttcaatattcatgct 795  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  13329223 aaataagagaggactaaagtgcagggattcacaaaacttgaatatggtatgctccggtattttgttacttttcattatcccctccttcaatattcatgct 13329322  T
Q  796 ccttccatgcttaaatcattgttcatgaaaccacaa 831  Q
    ||||||||||||||||||||||||||||||||||||    
T  13329323 ccttccatgcttaaatcattgttcatgaaaccacaa 13329358  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 1217504 - 1217586
Alignment:
Q  510 tatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagc-----ataataagtagagaataatcaacac 588  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  1217504 tatatacac-agagaatctctcaagaaaacataaataaggaaactaaatcaagcacagtataataagtagagaataatcaacac 1217586  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 781 - 944
Target Start/End: Original strand, 13357744 - 13357909
Alignment:
Q  781 ttcaatattcatgctccttccatgcttaaatcattgttcatgaaaccacaannnnnnnnnnnnnnnngaaaaaggaaatctttttcttctttacaa-tat 879  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||||||                ||||||||| |||||| |||||||||||| |||    
T  13357744 ttcaatatttatgctctttccatgctttaatcattgttcatgaaaccacaattttttttttttttttgaaaaaggagatctttctcttctttacaaatat 13357843  T
Q  880 aatttatattatttgtgttttacatcgcatgttattctct-agactctaaactatattatgtaaaa 944  Q
    |||||||||||||| |||||||||||||||  |||||||| |||| || | || ||||||||||||    
T  13357844 aatttatattatttttgttttacatcgcatactattctctaagacactgatctttattatgtaaaa 13357909  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 588 - 669
Target Start/End: Original strand, 13357276 - 13357357
Alignment:
Q  588 cataccaacaagagtcttgtttcaaggccttttattgcagagaatagtttatttagctgttgaatgacctttcgatatgtta 669  Q
    |||||| |||| ||||||  |||||||||||||||||  ||||||||||||||| || | |||||||||||| |||||||||    
T  13357276 catacccacaacagtcttaattcaaggccttttattgttgagaatagtttatttggccgatgaatgaccttttgatatgtta 13357357  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 723
Target Start/End: Complemental strand, 13377668 - 13377593
Alignment:
Q  648 tgaatgacctttcgatatgttactgcactttgaacttgaacttttcttcaaataagagaggactaaagtgcaggga 723  Q
    |||||||| |||  || |||||||| ||||||||||||||  || |||||| |||||||||||| || ||||||||    
T  13377668 tgaatgacattttaatttgttactgaactttgaacttgaatgttccttcaactaagagaggactgaattgcaggga 13377593  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 781 - 830
Target Start/End: Complemental strand, 13377443 - 13377394
Alignment:
Q  781 ttcaatattcatgctccttccatgcttaaatcattgttcatgaaaccaca 830  Q
    |||| ||||||| |||||||||||||| |||||  |||||||||||||||    
T  13377443 ttcattattcatactccttccatgcttcaatcacagttcatgaaaccaca 13377394  T

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Target: chr1 (Bit Score: 98; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 458 - 587
Target Start/End: Complemental strand, 25713242 - 25713113
Alignment:
Q  458 cttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaa 557  Q
    ||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25713242 cttgaataatttagattgaataactctaatattacaatgatgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaag 25713143  T
Q  558 tcaagcataataagtagagaataatcaaca 587  Q
    ||||||||||||||||||||||||||||||    
T  25713142 tcaagcataataagtagagaataatcaaca 25713113  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 491 - 587
Target Start/End: Complemental strand, 52964503 - 52964408
Alignment:
Q  491 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    |||||||||||  ||  |||||||||| ||||||||||||||| ||| || ||||||| |||||||||||| |||||||| ||||||||||||||||    
T  52964503 acaatgatgtatacaagcttatatacaagagagaatctctcaataaagca-aaataagaaaactaaatcaaccataataaatagagaataatcaaca 52964408  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 488 - 587
Target Start/End: Complemental strand, 52961401 - 52961303
Alignment:
Q  488 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    ||||||||||||||  || |||||| |||| |||| |||||||||| ||| || ||||||| |||||||||||| |||||||| || |||||||||||||    
T  52961401 attacaatgatgtatacaaacttatgtacaagagaaaatctctcaataaagca-aaataagcaaactaaatcaaccataataaataaagaataatcaaca 52961303  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 588
Target Start/End: Original strand, 18416188 - 18416285
Alignment:
Q  489 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaacac 588  Q
    ||||||||||||| |||   ||||||||| |||||||| ||||| |||| || |||  | |||||||||||||  ||||||| |||||||||||||||||    
T  18416188 ttacaatgatgtatgcaagtttatatacaagagagaatatctcatgaaagcaaaaa--acgaaactaaatcaactataataaatagagaataatcaacac 18416285  T

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Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 452 - 582
Target Start/End: Original strand, 30701252 - 30701382
Alignment:
Q  452 tacctacttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaa 551  Q
    |||| |||||||||||||| ||||||||| |  |  |||||||| ||||  |||| |||| |||||| |||||||||||||||||| |||||||||| ||    
T  30701252 taccaacttgaataatttagattgaataacttgtatattacaataatgtgtgcactcttacatacacaagagaatctctcaagaaagcataaataagaaa 30701351  T
Q  552 actaaatcaagcataataagtagagaataat 582  Q
    ||||||||||||||||||| |||||||||||    
T  30701352 actaaatcaagcataataattagagaataat 30701382  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 503 - 587
Target Start/End: Original strand, 30701463 - 30701547
Alignment:
Q  503 gcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    |||| |||| |||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  30701463 gcactcttacatacacaagataatctctcaagaaagcataaataaagaaactaaatcaagcataataattagagaataatcaaca 30701547  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 514 - 582
Target Start/End: Original strand, 30701394 - 30701462
Alignment:
Q  514 tacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataat 582  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30701394 tacacaagataatctctcaagaaagcataaataaggaaactaaatcaagcataataattagagaataat 30701462  T

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Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 491 - 588
Target Start/End: Complemental strand, 37001158 - 37001062
Alignment:
Q  491 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaacac 588  Q
    ||||||||||| |||  |||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  37001158 acaatgatgtatgcaagcttatatacaagagagaatctctcatgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatcaacac 37001062  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 511 - 587
Target Start/End: Complemental strand, 36997056 - 36996983
Alignment:
Q  511 atatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    |||||||||||||||||||  | ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  36997056 atatacacgagagaatctc--atgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatcaaca 36996983  T

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Target: chr7 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 488 - 588
Target Start/End: Complemental strand, 37625233 - 37625134
Alignment:
Q  488 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    |||||||||||| |  || |||||||||||||||||||| |||||| |||||| |||||| ||||||||||||| ||| |||| ||||||||||||||||    
T  37625233 attacaatgatgcatacaaacttatatacacgagagaatatctcaataaaaca-aaataatgaaactaaatcaaccatgataaatagagaataatcaaca 37625135  T

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Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 489 - 590
Target Start/End: Complemental strand, 33831235 - 33831136
Alignment:
Q  489 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaacac 588  Q
    ||||||||||||| |||  |||||||||| |||||||| |||||||||| || |||  |||||||||||||||  ||||||| |||||||||||||||||    
T  33831235 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaagaaagcaaaaa--aggaaactaaatcaactataataaatagagaataatcaacac 33831138  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 489 - 587
Target Start/End: Original strand, 37920552 - 37920648
Alignment:
Q  489 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| || |||  |||||||||||||||  ||||||| ||||||||||||||||    
T  37920552 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagcaaaaa--aggaaactaaatcaactataataaatagagaataatcaaca 37920648  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 489 - 588
Target Start/End: Complemental strand, 33835170 - 33835073
Alignment:
Q  489 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaacac 588  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| || |||  |||||||||||||||  ||||||| || ||||||||||||||    
T  33835170 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagcaaaaa--aggaaactaaatcaactataataaataaagaataatcaacac 33835073  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 37915378 - 37915420
Alignment:
Q  546 aaggaaactaaatcaagcataataagtagagaataatcaacac 588  Q
    ||||||||||||||||  ||||||| |||||||||||||||||    
T  37915378 aaggaaactaaatcaactataataaatagagaataatcaacac 37915420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 587
Target Start/End: Original strand, 8081382 - 8081479
Alignment:
Q  489 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagt-agagaataatcaaca 587  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| | |||||||||||||||    
T  8081382 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataagagaataatcaaca 8081479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 587
Target Start/End: Original strand, 30589118 - 30589198
Alignment:
Q  507 acttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatcaaca 587  Q
    ||||||||||| || |||||||||||||||||   ||| || |||| |||||||| |||| ||| ||||||||||||||||    
T  30589118 acttatatacaagaaagaatctctcaagaaaaagaaaacaatgaaattaaatcaatcatagtaaatagagaataatcaaca 30589198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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