View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-Insertion-39 (Length: 986)
Name: NF0235-Insertion-39
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-39 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 267 - 986
Target Start/End: Original strand, 40047571 - 40048284
Alignment:
| Q |
267 |
ttcaatcaatgctatcctgaagtttttctcatccaatatatgatatatatctatagcgattgtttcaatttgatgcatatatagattaaatcaaattact |
366 |
Q |
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| T |
40047571 |
ttcaatcaatgctatcctgaagtttttctcatccaatatat---------ctatagcgattgtttcaatttgatgcatatatagattaaatcaaattact |
40047661 |
T |
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| Q |
367 |
caatggatattcaaattcaaacatttttacaaggaataaaatgaacatggttcaaaccaagaacagaacagaactggnnnnnnnnnnnnttaaaatatgg |
466 |
Q |
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| T |
40047662 |
caatggatattcaaattcaaacatttttacaaggaataaaatgaacatggttcaaaccaacaacagaacagaactggaaaaaaaaaa--ttaaaatatgg |
40047759 |
T |
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| Q |
467 |
ttaattgtttgaaatcattcatatgcagctgccaaatgggtgatgtataatgatattcaactccataacattgccactgcaacaaaagctactccaatag |
566 |
Q |
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| T |
40047760 |
ttaattgtttgaaatcattcatatgcagctgccaaatgggtgatgtatgatgatcttcaactccataacattgccactgcaacaaaagctactccaatag |
40047859 |
T |
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| Q |
567 |
atatataagctgttccttgaattccaagtaaatttgctccagaacnnnnnnnatcctgtgttgttgtatcatcctcatcttcttcagaagaagactttgt |
666 |
Q |
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| T |
40047860 |
atatataagctgttccttgaattccaagtaaatttgctccagaactttttttatcctgtgttgttgtatcatcctcatcttcttcagaagaagactttgt |
40047959 |
T |
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| Q |
667 |
cttgtcagctttcggtgctattgcttccgcaacaggagcagcagcaggtgccttagtcccaaagaaatcaagaggaagcaaaaccttatccaaacgatat |
766 |
Q |
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| T |
40047960 |
cttatcagctttcggtgctattgcttccgcaacaggagcagcagcaggtgccttagtcccaaagaaatcaagaggaagcaaaaccttatccaaacgatat |
40048059 |
T |
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| Q |
767 |
atagcaagcttgttatcttgatagactacaccagtaacactagcattaaccacaccagttgaaagactaacactggtaccaaacgattcgatgttcaatg |
866 |
Q |
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| T |
40048060 |
atagcaagcttgttatcttgatagactacaccagtaacactagcattaaccacaccagttgaaagactaacactggtaccaaacgattcgatgttcaatg |
40048159 |
T |
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| Q |
867 |
gaagctttaaagggtctttaccagccactgtctc-acagggttactaagagaatcaaagttattgctatc-acaaactgtgga--gatgtggaattgtaa |
962 |
Q |
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| T |
40048160 |
gaagctttaaagggtctttaccagccactgtctcaacagggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaa |
40048259 |
T |
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| Q |
963 |
tagttcga-ttttttgttttcgttt |
986 |
Q |
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| T |
40048260 |
tagttcgatttttttgttttcgttt |
40048284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 40047348 - 40047552
Alignment:
| Q |
33 |
ttttaagcactaaaagatcaagaaacaaaagaacaaacttttagatctagaaatcaaattttgaaatatttttattagaggctcctatcata-------- |
124 |
Q |
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| T |
40047348 |
ttttaagcactaaaagatcaagaaacaaaagaacaaacttttagatctagaaatcaaattttgaaatatttttattagaggctcctatcataacacattg |
40047447 |
T |
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| Q |
125 |
-------acaaaatttggtaatattccaacaaatcctcaaattatgttaattttaatagggactaaaattgttgatgtaaaatattgtatgtaagtataa |
217 |
Q |
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| T |
40047448 |
tgtatccacaaaatttggtaatattccaaaaaatcctcaaattatgttaattttaagagggactaaaattgttgatgtaaaatattgtatgtaactataa |
40047547 |
T |
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| Q |
218 |
gttgt |
222 |
Q |
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| T |
40047548 |
gttgt |
40047552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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