View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-Insertion-41 (Length: 419)
Name: NF0235-Insertion-41
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-41 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 23176 - 22973
Alignment:
| Q |
42 |
ttttgaaacctgttgtatgatgatgaatagattgatatttttgtattggatgacaatgcaaaactattttgaaattagtgcatgtcgatgaggtgtactc |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23176 |
ttttgaaacctgttgtatgatgatgaatagattgatatttttctattggacgacaatgcaaaactattttgaaattagtgcatgtcgatgaggtgtacac |
23077 |
T |
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| Q |
142 |
tcaagctaacaagggtagttaacctcacgatcatatgcctgaatcaccttgctccattaaactgatatcgaaag--tatatttattttgagaaatgaaat |
239 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||| |
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| T |
23076 |
tcaagctaacaagggtagttaacctcacgaccgtatgcctgaatcaccttg-tccattaaactgatatcgaaagaatatatttatttaggaaaatgaaat |
22978 |
T |
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| Q |
240 |
gttaa |
244 |
Q |
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||||| |
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| T |
22977 |
gttaa |
22973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 255 - 419
Target Start/End: Complemental strand, 22726 - 22569
Alignment:
| Q |
255 |
aatagaataggggagagagactatagacatagttgagttgataccaaattatgattctgcaaaatagcaccacaacgaaacaacaccaattccaactctc |
354 |
Q |
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| T |
22726 |
aatagaataagggagagagactatag------ttgagttgataccaaattacgattctgcaaaatagcaccacaacgaaaca-caccaattccaactctc |
22634 |
T |
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| Q |
355 |
tgcaacctctctttgctcgcgcaccaccatgtatgtctcaaaacttatctctatttctttcattt |
419 |
Q |
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| T |
22633 |
tgcaacctctcttcgctcgcgcaccaccatgtatgtctcaaaacttatctctatttctttcattt |
22569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 1277915 - 1278118
Alignment:
| Q |
42 |
ttttgaaacctgttgtatgatgatgaatagattgatatttttgtattggatgacaatgcaaaactattttgaaattagtgcatgtcgatgaggtgtactc |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1277915 |
ttttgaaacctgttgtatgatgatgaatagattgatatttttctattggacgacaatgcaaaactattttgaaattagtgcatgtcgatgaggtgtacac |
1278014 |
T |
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| Q |
142 |
tcaagctaacaagggtagttaacctcacgatcatatgcctgaatcaccttgctccattaaactgatatcgaaag--tatatttattttgagaaatgaaat |
239 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||| |
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| T |
1278015 |
tcaagctaacaagggtagttaacctcacgaccgtatgcctgaatcaccttg-tccattaaactgatatcgaaagaatatatttatttaggaaaatgaaat |
1278113 |
T |
|
| Q |
240 |
gttaa |
244 |
Q |
| |
|
||||| |
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| T |
1278114 |
gttaa |
1278118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 255 - 419
Target Start/End: Original strand, 1278365 - 1278522
Alignment:
| Q |
255 |
aatagaataggggagagagactatagacatagttgagttgataccaaattatgattctgcaaaatagcaccacaacgaaacaacaccaattccaactctc |
354 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1278365 |
aatagaataagggagagagactatag------ttgagttgataccaaattacgattctgcaaaatagcaccacaacgaaaca-caccaattccaactctc |
1278457 |
T |
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| Q |
355 |
tgcaacctctctttgctcgcgcaccaccatgtatgtctcaaaacttatctctatttctttcattt |
419 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1278458 |
tgcaacctctcttcgctcgcgcaccaccatgtatgtctcaaaacttatctctatttctttcattt |
1278522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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