View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-Insertion-43 (Length: 690)
Name: NF0235-Insertion-43
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Original strand, 43052181 - 43052863
Alignment:
| Q |
8 |
agaaggccaaatcagacagtttggtcgtgaaggtaatttgtaaacactcagcttcccagtaagtggctctgagtttggcgaaatcacagtggcaatgtgg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43052181 |
agaaggccaaatcagacagtttggtcgtgaaggtaatttgtaaacactcagcttccctgtaagtggctctgagtttggtgaaatcacagtggcaatgtgg |
43052280 |
T |
|
| Q |
108 |
catcgtgattttgctgaagcttaaaatgtagcttttatcaaaattgcagctgccgtaattctcgcatgctcacggctaactcaaatatgcatgtaatgtt |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43052281 |
catcgtgattttgatgaagcttaaaatgtagcttttatcaaaattgcagctgccgtaattctcgcatgctcacggctaactcaaatatgcatgtaatgtt |
43052380 |
T |
|
| Q |
208 |
gcaactccattttgaaactaacaaaagacttgtaattggtacataagcagaaagcacatgtggagattcctgctcatatcatagctgaagcaatatcaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43052381 |
gcaactccattttgaaactaacaaaagacttgtaattggtacataagcagaaagcacatgtggagattcctgctcatatcatagctgaagcaatatcaac |
43052480 |
T |
|
| Q |
308 |
aatccgcggtattggccttagatggtcaggtccaattacaccgaaagaaatggaacatgtaaaacaatatgtcctagcaaagtatccagaatatgcaaat |
407 |
Q |
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| T |
43052481 |
aatccgcggtattggccttagatggtcaggtccaattacaccgaaagaaatggaatgtgtaaaacaatatgtcctagcaaagtatccagaatatgcaaat |
43052580 |
T |
|
| Q |
408 |
ctcattgaaggcgatggaagtggtacaggcatgtccagttttatgatcaatggggagcctttaaaattaccaccgtcagatgatagtagaaagtcattaa |
507 |
Q |
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| T |
43052581 |
ctcattgaaggcgatggaagtggtacagatatgtccagttttatgatcaatggggagcctttaaaattaccactgtcagatgatagtagaaagtcattaa |
43052680 |
T |
|
| Q |
508 |
gaccatcttataattttggaagcgaccctcctgaaatggatatgacacagttagagccatcaagactactagatattctcaataaaaaatcatcctttcc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43052681 |
gaccatcttataattttggaagcgaccctcctgaaatggatatgacacagctagagccatcaagactacttgatattctcaataaaaaatcatcctttcc |
43052780 |
T |
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| Q |
608 |
tggaagattcatctcgatcccggaaattcaagctcagaataaggttttgaagcattgtggtttgcctgatgctgagtatttgg |
690 |
Q |
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| T |
43052781 |
tggaagattcatctcgatcccggaaattcaagctcagaataaggttttgaagcattgtggtttgcctgatgctgagtatttgg |
43052863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 217 - 690
Target Start/End: Complemental strand, 42655591 - 42655121
Alignment:
| Q |
217 |
ttttgaaactaacaaaagacttgtaattggtacataagcagaaagcacatgtggagattcctgctcatatcatagctgaagcaatatcaacaatccgcgg |
316 |
Q |
| |
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||||||||||||||| | |||| |||||| ||| ||| ||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42655591 |
ttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgattcctgctcatatcatagctgaagcaatatcaactatccgcga |
42655492 |
T |
|
| Q |
317 |
tattggccttagatggtcaggtccaattacaccgaaagaaatggaacatgtaaaacaatatgtcctagcaaagtatccagaatatgcaaatctcattgaa |
416 |
Q |
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|||| ||| ||||||||||||||||| |||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
42655491 |
cattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaggaatatgtcctagcaaagtatcctgaatatgcaaatctaattgaa |
42655392 |
T |
|
| Q |
417 |
ggcgatggaagtggtacaggcatgtccagttttatgatcaatggggagcctttaaaattaccaccgtcagatgatagtagaaagtcattaagaccatctt |
516 |
Q |
| |
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|| ||||||||||||| || |||||| |||||||| ||||||| |||||||| |||||||| |||||||||||| ||||||||| |||| | ||| |
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| T |
42655391 |
ggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaattaccaatgtcagatgatagaagaaagtcaccaagatcgcctt |
42655292 |
T |
|
| Q |
517 |
ataattttggaagcgaccctcctgaaatggatatgacacagttagagccatcaagactactagatattctcaataaaaaatcatcctttcctggaagatt |
616 |
Q |
| |
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|||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || |
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| T |
42655291 |
---cttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactacttgatattctcaacaaaaaatcctcctttcctggaagttt |
42655195 |
T |
|
| Q |
617 |
catctcgatcccggaaattcaagctcagaataaggttttgaagcattgtggtttgcctgatgctgagtatttgg |
690 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
42655194 |
catctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatgatgagtatttgg |
42655121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 272 - 459
Target Start/End: Complemental strand, 45479769 - 45479582
Alignment:
| Q |
272 |
gattcctgctcatatcatagctgaagcaatatcaacaatccgcggtattggccttagatggtcaggtccaattacaccgaaagaaatggaacatgtaaaa |
371 |
Q |
| |
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|||||| ||||| |||||||||||||| |||||||| ||||||| | | ||||||||||||||||||| ||||| |||||||||||| |||| || |
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| T |
45479769 |
gattccagctcacatcatagctgaagcgatatcaactatccgcgaattcgatattagatggtcaggtccaatcacaccaaaagaaatggaatatgttgaa |
45479670 |
T |
|
| Q |
372 |
caatatgtcctagcaaagtatccagaatatgcaaatctcattgaaggcgatggaagtggtacaggcatgtccagttttatgatcaatg |
459 |
Q |
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|| ||||| ||||||||||||||||||||| ||| | |||||||| ||||||| ||| | || |||||| | ||||| ||||||| |
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| T |
45479669 |
cagtatgttctagcaaagtatccagaatattcaaggttgattgaaggagatggaaatgggatagacatgtctacctttatcatcaatg |
45479582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 559 - 663
Target Start/End: Complemental strand, 45479467 - 45479363
Alignment:
| Q |
559 |
tagagccatcaagactactagatattctcaataaaaaatcatcctttcctggaagattcatctcgatcccggaaattcaagctcagaataaggttttgaa |
658 |
Q |
| |
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|||||| |||||| |||| ||||||||||| || ||||| || ||| | ||||| ||||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
45479467 |
tagagcaatcaaggttacttgatattctcaacaagaaatcctcatttaccggaagtttcatatcgatccccgaaattcaagctcaaaataaggttttgaa |
45479368 |
T |
|
| Q |
659 |
gcatt |
663 |
Q |
| |
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||||| |
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|
| T |
45479367 |
gcatt |
45479363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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