View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-Insertion-45 (Length: 619)
Name: NF0235-Insertion-45
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-Insertion-45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Complemental strand, 54881411 - 54880809
Alignment:
| Q |
8 |
actagccatgttgtcttcaaccatgcaagaagaacttgcattttcattggaaactgatgttggtattatgtttgcttttgatctactagagtagtttctt |
107 |
Q |
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| T |
54881411 |
actagccatgttgtcttcaaccatgcaagaagaacttgcattttcattggaaactgatgttggtattatgtttgcttttgatctactagagtagtttctt |
54881312 |
T |
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| Q |
108 |
gcttcagagaaaatactggtggatgatgaatctgggtctaaagaattggttgaaagcttaacaccagagagaagaaacctgttatgtttctgtgtatgtt |
207 |
Q |
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| T |
54881311 |
gcttcagagacaatactggtggatgatgaatctgggtctaaagaattgcttgaaagcttaacaccagagagaagaaacctgttatgtttctgtgtatgtt |
54881212 |
T |
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| Q |
208 |
catttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaacnnnnnnncgca |
307 |
Q |
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| T |
54881211 |
gatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaacaaaaaa-cgca |
54881113 |
T |
|
| Q |
308 |
cgatattatttattattaattaattaaagaccattttaaaacgtggttagagttgtggttgcattagtgacatctgactcatgagattctttaaaatatt |
407 |
Q |
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| T |
54881112 |
agatattatt--------attaattaaagaccattttaaaacgtggttagagttgtggttgaattagtcacatctgactcatgagattctttaaaatatt |
54881021 |
T |
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| Q |
408 |
aaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttggagttgaggtgaacaagagaaaaacgagtgtgtttggt |
507 |
Q |
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| T |
54881020 |
aaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttggagttgaggtgaacaagagaaaaacgagtgtgtttggt |
54880921 |
T |
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| Q |
508 |
tgcgagcttgttggcacggtggatggtatgatcacatccatggcaaagagcagcttcatctgaaggacagaacatagtagcctcagctttctcacacaca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54880920 |
tgcgagcttgttggcacggtggatggtatgatcacatccatggcaaagagcagcttcatctgaaggacagaacatagtagcctcagctttctcacacaca |
54880821 |
T |
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| Q |
608 |
tcacattggatc |
619 |
Q |
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| T |
54880820 |
tcacattggatc |
54880809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 26846622 - 26846544
Alignment:
| Q |
217 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaa |
295 |
Q |
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||||||| |||| ||||||||| ||||| || || ||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
26846622 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaa |
26846544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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