View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235-Insertion-47 (Length: 687)
Name: NF0235-Insertion-47
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0235-Insertion-47 |
 |  |
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[»] chr8 (2 HSPs) |
 |  |
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[»] scaffold0405 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 135 - 687
Target Start/End: Complemental strand, 38016680 - 38016131
Alignment:
Q |
135 |
tgagtagagagtgaacatgttcagcaaagaatctcacatcaa-ttcagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaataca |
233 |
Q |
|
|
|||||||||||||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||| |
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|
T |
38016680 |
tgagtagagagtgaacatgtcgaacaaagaatctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaataca |
38016581 |
T |
 |
Q |
234 |
ttgattttgctcacctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtt |
333 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
38016580 |
ttgattttgctcacctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtt |
38016481 |
T |
 |
Q |
334 |
tatgtttatttggattaacgttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaaga |
433 |
Q |
|
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
T |
38016480 |
t--------ttagattaacgttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtgattttgagaataaaaagtggtaaaaaga |
38016389 |
T |
 |
Q |
434 |
atgga----gggttttgtttaatcaaaagaaattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttattttctttcacgtgcat |
529 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
38016388 |
atggatggagggttttgtttaatcaaaagaaattgttcaataaaaagatcacaagaacttacttgaggcaaatttcattcttattttctttcacgtgcat |
38016289 |
T |
 |
Q |
530 |
ttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttcttctccaatttctgaatatgacaatg |
629 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
T |
38016288 |
ttcttaaatcaatgcatggaaaaggtaataactctcattatgattggaatttaaaattaactttgtgttgtttcttctccaatttctgaatatgacaatg |
38016189 |
T |
 |
Q |
630 |
aggacaatattccattggaatttttaagtagttagatggaatttgcacatctgtttca |
687 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
T |
38016188 |
aggacaatattccattggaatttttaagtaattagatggaatttgcacatctgtttca |
38016131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 38016728 - 38016696
Alignment:
Q |
11 |
ttgacacggctcaaagcctacaaggctacaaaa |
43 |
Q |
|
|
||||||||||||||||||||||||||||||||| |
|
|
T |
38016728 |
ttgacacggctcaaagcctacaaggctacaaaa |
38016696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 9e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 179 - 437
Target Start/End: Complemental strand, 16961202 - 16960945
Alignment:
Q |
179 |
cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat |
278 |
Q |
|
|
|||||||||||||| ||||||||||||| ||||||||| |||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
16961202 |
cagatctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtattcaatctat |
16961103 |
T |
 |
Q |
279 |
ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt |
378 |
Q |
|
|
| |||| || | ||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||| |||||||||||||| | ||||||||||||| |
|
|
T |
16961102 |
cacaatctgatgtatgctaatttgttaattttagaattaaatatttgggtttatttatgtttatttaatttaacgttaaattaagtgaattttgtatttt |
16961003 |
T |
 |
Q |
379 |
gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatgg |
437 |
Q |
|
|
|| | || ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
T |
16961002 |
gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaatgg |
16960945 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 179 - 434
Target Start/End: Original strand, 25868707 - 25868961
Alignment:
Q |
179 |
cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat |
278 |
Q |
|
|
|||||||| ||||| |||||||||| |||||||||||| |||| || |||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
T |
25868707 |
cagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttatccaggtattcaatctat |
25868806 |
T |
 |
Q |
279 |
ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt |
378 |
Q |
|
|
| |||| || | ||||||||||| ||| ||||| |||||||||| ||||||| |||| ||||||||| |||||||||||||| | ||||||||||||| |
|
|
T |
25868807 |
cccaatctgatgtatgctaatttattaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt |
25868906 |
T |
 |
Q |
379 |
gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaa |
434 |
Q |
|
|
|| | || ||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
25868907 |
gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaa |
25868961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 26496545 - 26496601
Alignment:
Q |
460 |
aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt |
516 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
26496545 |
aattgttctataaaaagatcacaagaacttacttgaggcaagtctcattcttatttt |
26496601 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 26496619 - 26496686
Alignment:
Q |
505 |
cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgat |
573 |
Q |
|
|
||||||||||||||| | || |||||||| | |||| ||||||||| |||||||||||||||||||| |
|
|
T |
26496619 |
cattcttattttcttctatgttcatttcttta-tcaagtcatggaaaaggtaataactctcattatgat |
26496686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 9e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 179 - 440
Target Start/End: Complemental strand, 46595329 - 46595069
Alignment:
Q |
179 |
cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat |
278 |
Q |
|
|
|||||||| ||||| ||||||||||||| ||||||||| |||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
T |
46595329 |
cagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctat |
46595230 |
T |
 |
Q |
279 |
ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt |
378 |
Q |
|
|
| |||| || | ||||||||||||||| ||||| |||||||||| ||||||| |||| ||||||||| |||||||||||||| | ||||||||||||| |
|
|
T |
46595229 |
cccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt |
46595130 |
T |
 |
Q |
379 |
gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatggagg |
440 |
Q |
|
|
|| | || ||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
T |
46595129 |
gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggagg |
46595069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 505 - 626
Target Start/End: Complemental strand, 46594437 - 46594317
Alignment:
Q |
505 |
cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttct |
604 |
Q |
|
|
||||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| | |
|
|
T |
46594437 |
cattcttattttcttctatgtgcatttcttaa-tcaagtcatggaaaaggtaataactctcattatgattggaatttaaaattaacttagggttgttttt |
46594339 |
T |
 |
Q |
605 |
tctccaatttctgaatatgaca |
626 |
Q |
|
|
||||||||||| |||||||||| |
|
|
T |
46594338 |
tctccaatttcagaatatgaca |
46594317 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 46594511 - 46594455
Alignment:
Q |
460 |
aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt |
516 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
46594511 |
aattgttcgataaaaagatcacaagaacttacttgaggcaatcctcattcttatttt |
46594455 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 179 - 439
Target Start/End: Original strand, 4435509 - 4435768
Alignment:
Q |
179 |
cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat |
278 |
Q |
|
|
|||||||| ||||| ||||||||||||| ||||||||| |||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
T |
4435509 |
cagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctat |
4435608 |
T |
 |
Q |
279 |
ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt |
378 |
Q |
|
|
| |||| || | ||||||||||||||| ||||| |||||||||| ||||||| |||| ||||||||| |||||||||||||| | ||||||||||||| |
|
|
T |
4435609 |
cccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt |
4435708 |
T |
 |
Q |
379 |
gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatggag |
439 |
Q |
|
|
|| | || ||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
T |
4435709 |
gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggag |
4435768 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 246 - 434
Target Start/End: Original strand, 4091797 - 4091984
Alignment:
Q |
246 |
acctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttg |
345 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||| ||| | |||||||||| ||||||| |||||||||||||| |
|
|
T |
4091797 |
acctaattccatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaatttcagaattaaatatctgggtttatttatgtttatttg |
4091896 |
T |
 |
Q |
346 |
gattaacgttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaa |
434 |
Q |
|
|
|||||||||||||| | ||||||||||||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
4091897 |
atttaacgttaaattaagtgaattttgtattttgttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaa |
4091984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 505 - 626
Target Start/End: Original strand, 4436401 - 4436521
Alignment:
Q |
505 |
cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttct |
604 |
Q |
|
|
||||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| | |
|
|
T |
4436401 |
cattcttattttcttctatgtgcatttcttaa-tcaagtcatggaaaaggtaataactctcattatgattggaatttaaaattaacttagggttgttttt |
4436499 |
T |
 |
Q |
605 |
tctccaatttctgaatatgaca |
626 |
Q |
|
|
||||||||||| |||||||||| |
|
|
T |
4436500 |
tctccaatttcagaatatgaca |
4436521 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 4436327 - 4436383
Alignment:
Q |
460 |
aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt |
516 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
4436327 |
aattgttcgataaaaagatcacaagaacttacttgaggcaatcctcattcttatttt |
4436383 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 37719570 - 37719392
Alignment:
Q |
179 |
cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat |
278 |
Q |
|
|
|||||||| ||||| ||||||||||||| ||||||||| |||| || |||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
T |
37719570 |
cagatctcgaaatcctctgcatctcgatctgttggttttaacc-atgaaaaaacattgattttgctgacctaatttcatttctccaggtattcaatctat |
37719472 |
T |
 |
Q |
279 |
ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaa |
358 |
Q |
|
|
| |||| || | |||||||||||| || ||||| |||||||||| ||||||| |||| ||||||||| ||||||||||| |
|
|
T |
37719471 |
cccaatctgatgtatgctaatttgctaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaa |
37719392 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 165 - 420
Target Start/End: Complemental strand, 30440804 - 30440559
Alignment:
Q |
165 |
atctcacatcaattc-agatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctcc |
263 |
Q |
|
|
|||||||||||| || ||||||||||||| ||| ||||| ||| ||||||||| |||| || ||||| ||||||||||||| |||||||||||||| || |
|
|
T |
30440804 |
atctcacatcaaatccagatctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaattccattttccc |
30440705 |
T |
 |
Q |
264 |
aggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattaca |
363 |
Q |
|
|
||||||||||| | ||| ||||||||||||| | ||||| |||||||||| ||||||| |||||||||||||| |||||||||||||| |
|
|
T |
30440704 |
aggtattcaattt----------gttgtatgctaatttgtgaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaag |
30440615 |
T |
 |
Q |
364 |
ttaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaa |
420 |
Q |
|
|
| ||||||||||||||| |||| ||||| ||||||||||| |||| ||||||||| |
|
|
T |
30440614 |
tgaattttgtattttgttgttt-tattgaacaaacaatggtgttttttagaataaaa |
30440559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 505 - 626
Target Start/End: Complemental strand, 37718759 - 37718639
Alignment:
Q |
505 |
cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttct |
604 |
Q |
|
|
||||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| | |
|
|
T |
37718759 |
cattcttattttcttctatgtgcatttcttaa-tcaagtcatggaaaaggtaataactctcattatgattggaatttaaaattaacttagggttgttttt |
37718661 |
T |
 |
Q |
605 |
tctccaatttctgaatatgaca |
626 |
Q |
|
|
||||||||||| |||||||||| |
|
|
T |
37718660 |
tctccaatttcagaatatgaca |
37718639 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 37718833 - 37718778
Alignment:
Q |
460 |
aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttattt |
515 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
37718833 |
aattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattcttattt |
37718778 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 254 - 452
Target Start/End: Original strand, 47521067 - 47521264
Alignment:
Q |
254 |
ccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacg |
353 |
Q |
|
|
||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||| ||| |||||| ||||||| | |||||| ||||| |||||| |
|
|
T |
47521067 |
ccatttctccaggtattcaatctatctcaatctgatgtatgctaatttgttaattttagaatcaaatatatgggtttatatatgttcatttgatttaacg |
47521166 |
T |
 |
Q |
354 |
ttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatggagggttttgtttaat |
452 |
Q |
|
|
|||||||| | ||||||||||||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||| || |||| |||||||| |
|
|
T |
47521167 |
ttaaattaagtgaattttgtattttgttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaat |
47521264 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 47521828 - 47521884
Alignment:
Q |
460 |
aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt |
516 |
Q |
|
|
|||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||| |
|
|
T |
47521828 |
aattgttcgataaaaaaatcacaagaacttacttgaggcaagcctcattcttttttt |
47521884 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 633
Target Start/End: Complemental strand, 13256 - 13222
Alignment:
Q |
599 |
gtttcttctccaatttctgaatatgacaatgagga |
633 |
Q |
|
|
|||||||||||||||||||||| |||||||||||| |
|
|
T |
13256 |
gtttcttctccaatttctgaatctgacaatgagga |
13222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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