View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase1 (Length: 406)
Name: NF0235Ase1
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase1 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 31637810 - 31638024
Alignment:
| Q |
13 |
aacctaggtgtaaaggggtaagagagaaggagagactcagnnnnnnnggttgaaaatggcattcaccaacaaccaacattaaaaattgttgcctaaagta |
112 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
31637810 |
aaccttggtgtaaaggggta-gagagaaggagagactcagtttttttggttgaaaatggtattcaccaacaaccaacataaaaaattgttgcctaaagta |
31637908 |
T |
|
| Q |
113 |
gagacaaaatttccaaataattagggctagtttaggaatcaactagataattgaataccacaagatt-nnnnnnnnnnnttatagtacttccttaataaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31637909 |
cagacaaaatttccaaataattagggctagtttaggaatcaactagataattgaataccacaagattaaaaaaaaaaaattatagtacttccttaataaa |
31638008 |
T |
|
| Q |
212 |
aacttagttcttcccc |
227 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
31638009 |
aacttagttcttcccc |
31638024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 31672019 - 31671804
Alignment:
| Q |
13 |
aacctaggtgtaaaggggtaagagagaaggagagactcagnnnnnnnggttgaaaatggcattcaccaacaaccaacattaaaaattgttgcctaaagta |
112 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
31672019 |
aaccttggtgtaaaggggta-gagagaaggagagactcagtttttttggttgaaaatggtattcaccaacaaccaacataaaaaattgttgcctaaagta |
31671921 |
T |
|
| Q |
113 |
gagacaaaatttccaaataattagggctagtttaggaatcaactagataattgaataccacaagatt--nnnnnnnnnnnttatagtacttccttaataa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
31671920 |
gagacaaaatttccaaataattagggctagtttaggaatcaactagataaatgaataccacaagattaaaaaaaaaaaaattatagtacttccttaataa |
31671821 |
T |
|
| Q |
211 |
aaacttagttcttcccc |
227 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
31671820 |
aaacttagttcttcccc |
31671804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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