View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase11 (Length: 363)
Name: NF0235Ase11
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase11 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 130 - 357
Target Start/End: Complemental strand, 19077356 - 19077130
Alignment:
| Q |
130 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
229 |
Q |
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| T |
19077356 |
caccttaggttaatcaattgcagcttctacgcctaaactcattggatataactcatcattgtactccatcaatctatcaacataactaagccctacaatt |
19077257 |
T |
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| Q |
230 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagtcctgcaaagttcttatcaaaccacccaaagctcc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
19077256 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagttctgcaaaattcttatcaaaccacccaaagctcc |
19077157 |
T |
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| Q |
330 |
aatggtttgattagcaaatagttaatta |
357 |
Q |
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||| |||| ||||||||||||||||||| |
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| T |
19077156 |
aatagttt-attagcaaatagttaatta |
19077130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 19079008 - 19078896
Alignment:
| Q |
179 |
aacttatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttcctctatttctggactatgcctttatatgtt |
278 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19079008 |
aactcatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttccactatttctggactatgcctttatatgtt |
19078909 |
T |
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| Q |
279 |
taaataaaagctc |
291 |
Q |
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|||||||| |||| |
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| T |
19078908 |
taaataaaggctc |
19078896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 19077478 - 19077391
Alignment:
| Q |
8 |
aagttaacgtcttttaggaaattctgatcaatcaatctcccatgataatctctccaatgattccataataatcttggcataggatatc |
95 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19077478 |
aagttaacgtcttctacgaaattctgatcaatcaatctcccatgataatctctccaatgattccataataatcttggcataggatatc |
19077391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 19079203 - 19079116
Alignment:
| Q |
8 |
aagttaacgtcttttaggaaattctgatcaatcaatctcccatgataatctctccaatgattccataataatcttggcataggatatc |
95 |
Q |
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||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19079203 |
aagttaacgtcttctacgaaattttgatcaatcaatctcccatgataatctctccaatgattccataataatcttggcataggatatc |
19079116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 19078091 - 19078247
Alignment:
| Q |
130 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
229 |
Q |
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|||||||||| | ||||||| ||||||| |||||| |||| |||| ||||| ||||| ||||||||||| |||||| |||| ||| | | | |||| |
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| T |
19078091 |
caccttaggtaagtcaattggagcttcttaacctaaaatcattggatgtaactcatcatcgtactccatcactctatctacatgacttatgcatttaatt |
19078190 |
T |
|
| Q |
230 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaa |
286 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||||||| ||||| ||||| |
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| T |
19078191 |
tctattttatattttcttcctctatttttggaatatgcctttatcggtttagataaa |
19078247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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