View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase12 (Length: 554)
Name: NF0235Ase12
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase12 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Original strand, 49510947 - 49511487
Alignment:
| Q |
7 |
taattgtattgcaagtatcttcccaacattttcccggcacataccgttctgctccatccaatggaatatacggaacagaaccatctagaaaatgtgcatc |
106 |
Q |
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| T |
49510947 |
taattgcattgcaagtatcttcccaacattttcccggcacataccgttctgctccatccaatggaatatacggaacagaaccatctagaaaatgtgcatc |
49511046 |
T |
|
| Q |
107 |
ttggtaaagagtaatttggcaaccattattttgtttaaagaatgtgcgaggaactccttgatatcctggactctttattccttgtgaccagtttggatca |
206 |
Q |
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| T |
49511047 |
ttggtaaagagtaatttggcaaccattattttgtttaaagaatgtgcgaggaactccttgatatcctggactctttagtccttgtgaccagtttggatca |
49511146 |
T |
|
| Q |
207 |
tttttaacatgtgagaattgtatttgaacatgaattttggaaccgccttgtattggacgatgatctacatctaatatattaacccatgtattcactatgt |
306 |
Q |
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| T |
49511147 |
tttttaacatgtgagaattgtatttgaacatgaattttggaaccgccttgtattggatgatgatctacatctaatatattaacccatgtattcactatgt |
49511246 |
T |
|
| Q |
307 |
tgccctttatgacttgttcaactggaacataagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgttggagattga |
406 |
Q |
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| T |
49511247 |
tgccctttatgacttgttcaactggaacataagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgttggagattga |
49511346 |
T |
|
| Q |
407 |
atgtgcagagtaaatgtgaaaggtttcgttccatttggggctacctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcatataga |
506 |
Q |
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| T |
49511347 |
atgtgcagagtaaatgtgaaaggtttcgttccatttggggctacctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcatataga |
49511446 |
T |
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| Q |
507 |
cccatcccaataatctgtgaaatgtttttaaatgttgttag |
547 |
Q |
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| T |
49511447 |
cccatcccaataatctgtgaaatgtttttaaatgttgttag |
49511487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 49522352 - 49522404
Alignment:
| Q |
450 |
cctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcata |
502 |
Q |
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||||||||||| |||| |||||| |||||||| |||||||||||||||||||| |
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| T |
49522352 |
cctatcattctggttcgtccaacccttgctttatctaaatcaactgttgcata |
49522404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 49522226 - 49522287
Alignment:
| Q |
336 |
taagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgtt |
397 |
Q |
| |
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||||||||||| ||||||||||| ||||| || ||||| | |||||||||||||| |||||| |
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| T |
49522226 |
taagctcttcctattagagttgcaccaatcggattatcatctttgacagtgaatacaatgtt |
49522287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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