View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase15 (Length: 676)
Name: NF0235Ase15
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase15 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 21602585 - 21602093
Alignment:
| Q |
13 |
ttttttcgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatactg |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
21602585 |
ttttttcgacgtgcacttcgaaaataattatttgatttagaaagtgagagatataagatttttatctaaatgatctattttaaatcatgtctagatactg |
21602486 |
T |
|
| Q |
113 |
cctagacatagggttaggtttgcaatcatatcaattattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaa |
212 |
Q |
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|||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21602485 |
cctaaacatagggttaggtttgcaatcatattaattatccggtcatatgccatggaatcaataatctattttgctcagcaacggaagttgattgatacaa |
21602386 |
T |
|
| Q |
213 |
tggatttcgtttcattaggcatacatgccaacgtatgaatagggatagatggaggtataattgaaacagaaggaatatataatcgaaggacattaaaagc |
312 |
Q |
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||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||| |
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| T |
21602385 |
tggatttcgcttcattatgcatacatgtcaacatatgaatagggatagatggaggtataatttaaacataaggagtatataatcgaagggcattagaagc |
21602286 |
T |
|
| Q |
313 |
tcagttaatgaatcttaatcccgacaatacaatctctatttttg-ttcatctcttacattgtacataccacatgtttaaccaaccacttttctttactta |
411 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||| |||| |||||||| |
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| T |
21602285 |
tcagttaatgaagcttaatcacgacaatacaatctctatttttgtttcatctcttacactgcacataccacatgtttaaacaaccatttttttttactta |
21602186 |
T |
|
| Q |
412 |
aaacaataatatttattaaacagttttagtttcgcacgagttattatggatacgataacttggaatactaaattttgatgatgctaaaagcaa |
504 |
Q |
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| T |
21602185 |
aaacaataatatttattaaacggttctagtttcgcacgagtccttgtggatacgataacttggaatactaaattttgatgccgctaaaagcaa |
21602093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 1819191 - 1819448
Alignment:
| Q |
7 |
taatgcttttttcgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtag |
106 |
Q |
| |
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||||||||||| ||||||||| ||| ||||| |||||||||||||||||||| || ||| | || ||||||||| |||| | |||||| ||||||||| |
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| T |
1819191 |
taatgctttttccgacgtgcaatccaaaaatgattatttgatttagaaagtgtgaaacatcatatgtttatctaagggatatgttttaagccatgtgtag |
1819290 |
T |
|
| Q |
107 |
atactgcctagacatagggttaggtttgcaatcata-tcaattattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagttgatt |
205 |
Q |
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||||| | | | |||||| |||| || ||||| |||| ||| ||| |||| ||| |||||||| | |||||||||||| ||||| || || ||| |
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| T |
1819291 |
atact-aatgcatagagggtttagtttacattcatattcaactatcaagtcgtatgtcattgaatcaattagctattttgctcaacatcgaaatttaatt |
1819389 |
T |
|
| Q |
206 |
gatacaatggatttcgtttcattaggcatacatgccaacgtatgaatagggatagatgga |
265 |
Q |
| |
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|||| ||||||||| | |||||| || | ||||| ||||||| || ||||||||||||| |
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| T |
1819390 |
gataaaatggattt-gcttcatttggaagacatgtcaacgtacgataagggatagatgga |
1819448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 31999098 - 31999026
Alignment:
| Q |
148 |
tattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaatggatttc |
220 |
Q |
| |
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|||||||||||| ||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
31999098 |
tattcggtcatacgccatcaaatcaatcagctattttgcccagcaatggaagttgattgatacaatggatttc |
31999026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 6269467 - 6269415
Alignment:
| Q |
157 |
atatgccatggaatcaataatctattttgctcagcatcggaagttgattgata |
209 |
Q |
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||||| ||| ||||||||| ||||||| |||||||| ||||||||||||||| |
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|
| T |
6269467 |
atatgtcattgaatcaatagactatttttctcagcattggaagttgattgata |
6269415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 8934180 - 8934245
Alignment:
| Q |
155 |
tcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaatggatttc |
220 |
Q |
| |
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| T |
8934180 |
tcatatgccatcgaatcaatatgttattttgctcagcatccaaagttgattgatacaatgtatttc |
8934245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 11917674 - 11917621
Alignment:
| Q |
167 |
gaatcaataatctattttgctcagcatcggaagttgattgatacaatggatttc |
220 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
11917674 |
gaatcaatcatctattttgctcacgttcggaagtcgattgatacaatggatttc |
11917621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 298
Target Start/End: Original strand, 2558809 - 2558989
Alignment:
| Q |
119 |
catagggttaggtttgcaatcatat-caattattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaatggat |
217 |
Q |
| |
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|||||||| |||||||| | |||| ||| |||||||| ||||| ||| |||||||| ||||||||||||| |||||||||| || | || |||| || |
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| T |
2558809 |
catagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcaacatcggaagtcgacaggtaaaatgaat |
2558908 |
T |
|
| Q |
218 |
ttcgtttcattaggcatacatgccaacgtatgaatagggatagatggaggtataattgaaacagaaggaatatataatcga |
298 |
Q |
| |
|
||| | || || || ||||| ||| ||||| ||||||| || || |||||||||| ||||||||||||||||||| |
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|
| T |
2558909 |
ttcatgtcgttttccagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaaggaatatataatcga |
2558989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 48822915 - 48822864
Alignment:
| Q |
7 |
taatgcttttttcgacgtgcactccgaaaataattatttgatttagaaagtg |
58 |
Q |
| |
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||||||||| | ||||||||| ||||||||| ||||||||||||| |||||| |
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|
| T |
48822915 |
taatgctttctccgacgtgcaatccgaaaatgattatttgatttaaaaagtg |
48822864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 442616 - 442547
Alignment:
| Q |
120 |
atagggttaggtttgcaatcatat-caattattcggtcatatgccatggaatcaataatctattttgctc |
188 |
Q |
| |
|
|||||||||||||| || |||||| ||| |||||||||||| | ||| |||||||| | ||||||||||| |
|
|
| T |
442616 |
atagggttaggtttacattcatattcaactattcggtcatacgacatcgaatcaatcaactattttgctc |
442547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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