View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase18 (Length: 838)
Name: NF0235Ase18
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase18 |
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Alignment Details
Target: chr2 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Complemental strand, 42837686 - 42836959
Alignment:
| Q |
8 |
aaagctatctcgactgcaagcgttggccctcctgaatctccagcaagctcttgaaatgcagctttgtcttgtggtgtaaaggtttgatcattctccaatt |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42837686 |
aaagctatctcgactgcaagcgttggccctcctgaatctccagcaagctcttgaaatgcagctttgtcttgtggtgtaaaggtttcatcattctccaatt |
42837587 |
T |
|
| Q |
108 |
tcctccataaagtggaagaatcaatttccataaaaggtagtcgacttaaaagacaaacagcaaccattgatcgaacaacagacaaaggagtaactttctc |
207 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
42837586 |
tcctccatagagtggaagaatcaatttccataaaaggtagtcgacttaaaagacaaacagcaaccattgatagaacaacggacaaaggagtaactttctc |
42837487 |
T |
|
| Q |
208 |
taatactggatttgtagtaacaacaagagaggttttcaaggttttaacagaaggtttttgaggtagttgttggagagatgatgatttgggagggttgaaa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837486 |
taatactggatttgtagtaacaacaagagaggttttcaaggttttaacagaaggtttttgaggtagttgttggagagatgatgatttgggagggttgaaa |
42837387 |
T |
|
| Q |
308 |
ttggttaaaggaggtgtaggagcaaaaggacggtggttgaaagaagagagaactttgagagaaaggtcgagagaagaaacaaaattaggtataacagatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837386 |
ttggttaaaggaggtgtaggagcaaaaggacggtggttgaaagaagagagaactttgagagaaaggtcgagagaagaaacaaaattaggtataacagatt |
42837287 |
T |
|
| Q |
408 |
gtacagaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctgtctccatctccattgatgatga |
507 |
Q |
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| T |
42837286 |
gtacagaagaaagcatgtacatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctgtctccatctccattgatgatga |
42837187 |
T |
|
| Q |
508 |
atgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggcgcggctaccacgagcaacttctcttgggtt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
42837186 |
atgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaag-----cggctaccacgagcaactcctcttgggtt |
42837092 |
T |
|
| Q |
608 |
ttccgggggagttggtagtttctaatacactatgtcgatctagggttttggtttttattgnttaaaacaaggattactctggtcttatatagtaaagaat |
707 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
42837091 |
ttcc-ggtgagttggtagtttctaatacactatgtcgatctagggttttgg-ttttattgtttaaaacaaggattactctggtcttatatagtagagaat |
42836994 |
T |
|
| Q |
708 |
acttggtattgggctttgntttatctcgttnaaaa |
742 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| |
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| T |
42836993 |
acttggtattgggcttttgtttatctcgtttaaaa |
42836959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 43914602 - 43915079
Alignment:
| Q |
8 |
aaagctatctcgactgcaagcgttggccctcctgaatctccagcaagctcttgaaatgcagctttgtcttgtggtgtaaaggtttgatcattctccaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||| |||||||| |||||||||| |
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| T |
43914602 |
aaagctatctcgactgcaagcgttggccctcctgaatctccaccaagctcttgaagtgcggctttgtcttgtggcataaccgtttgatcgttctccaatt |
43914701 |
T |
|
| Q |
108 |
tcctccataaagtggaagaatcaatttccataaaaggtagtcgacttaaaagacaaacagcaaccattgatcgaacaacagacaaaggagtaactttctc |
207 |
Q |
| |
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||| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |
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| T |
43914702 |
tccacaataaagtggaagaatcaataggtgaaaaaggtactcgacttaaaagacaaacagcaaccattgatcgaacaatggacaaagaactaactttctc |
43914801 |
T |
|
| Q |
208 |
taatactggatttgtagtaacaacaagaga------ggttttcaaggtt----------ttaacagaaggtttttgaggtagttgttggagagatgatga |
291 |
Q |
| |
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|| |||||||| ||||||||| | |||| |||||| ||| || ||| | |||| ||||||||||||||||||||||||||| |
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| T |
43914802 |
agattctggatttttagtaacaaga-gagattttagggttttgaagattattattattgttattaaaagggttttgaggtagttgttggagagatgat-- |
43914898 |
T |
|
| Q |
292 |
tttgggagggttgaaattggttaaaggagg------------tgtaggagcaaaaggacggtggttgaaagaagagagaactttgagagaaaggtcgaga |
379 |
Q |
| |
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|||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
43914899 |
-ttggaagggttgaaattggttagaggaggagggagagggggtgtaggagcaaaaggacggtggttgaaagaagagagaactttcagagaaaggtcaaga |
43914997 |
T |
|
| Q |
380 |
gaagaaacaaaattaggtataacagattgtacagaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctt |
461 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
43914998 |
gaagaaacaagattaggtataacggattgtacagaagaaagcatgtccatgtgtgacttgtgttgggtttctatgcgagctt |
43915079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 43915105 - 43915156
Alignment:
| Q |
466 |
actgtttataccttcatctgtctccatctccattgatgatgaatgattgatt |
517 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||| ||||||||||||| |||| |
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| T |
43915105 |
actgtttaaaccttcatctgtctccatgttcatggatgatgaatgatggatt |
43915156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 8635949 - 8636165
Alignment:
| Q |
8 |
aaagctatctcgactgcaagcgttggccctcctgaatctccagcaagctcttgaaatgcagctttgtcttgtggtgtaaaggtttgatcattctccaatt |
107 |
Q |
| |
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||||||||||| || ||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||| | || |||||| ||||||||| | |
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| T |
8635949 |
aaagctatctcaaccgcaagtgttggctctcttgaatctccagcaagctcttgaagtgcagctttgtcttgaag---aaccatttgattattctccaaat |
8636045 |
T |
|
| Q |
108 |
tcctccataaagtggaagaatcaatttccataaaaggtagtcgacttaaaagacaaacagcaaccattgatcgaacaacagacaaaggagtaactttctc |
207 |
Q |
| |
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||||| | | ||||||| || |||| | ||||||||| ||| | ||||||||||| || ||||||||||||||| |||||| || ||||||||| |
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| T |
8636046 |
tcctcaacacagtggaaaaactaattagcgtaaaaggtacccga--ttaaagacaaacaccatccattgatcgaacaatggacaaaagactaactttctt |
8636143 |
T |
|
| Q |
208 |
taatactggatttgtagtaaca |
229 |
Q |
| |
|
| | |||||| |||||||||| |
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|
| T |
8636144 |
tgtttctggatatgtagtaaca |
8636165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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