View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase2 (Length: 171)
Name: NF0235Ase2
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase2 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 5e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 24705128 - 24704970
Alignment:
| Q |
7 |
agcatgaaatacatataacaaccatttttaattataaaaattattcttattttacatcttatagctgatgattgattgcttatggttgatggccattgat |
106 |
Q |
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| T |
24705128 |
agcatgaaatacatataacaaccatttttaattataaaaattatttttattttatatcttatagctgatgattgattgcttatggttgatggccgttgat |
24705029 |
T |
|
| Q |
107 |
tgatgactgataaactaataaaattgtttgataaatttagtggttcaactagctaatta |
165 |
Q |
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| T |
24705028 |
tgatgactgataaactaataaaattgtttgataaatttagtggttcaaccaactaatta |
24704970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 24712470 - 24712428
Alignment:
| Q |
113 |
ctgataaactaataaaattgtttgataaatttagtggttcaac |
155 |
Q |
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| T |
24712470 |
ctgataagctaataaaattgtttgataagtttagtggttcaac |
24712428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 31011576 - 31011529
Alignment:
| Q |
113 |
ctgataaactaataaaattgtttgataaatttagtggttcaactagct |
160 |
Q |
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|
| T |
31011576 |
ctgataaactaattaaattatttgataaaattagttgtttaactagct |
31011529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 13762513 - 13762457
Alignment:
| Q |
107 |
tgatgactgataaactaataaaattgtttgataaatttagtggttcaactagctaat |
163 |
Q |
| |
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|||||||| |||| ||||| ||||||||||||||| |||| |||||||||| ||||| |
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|
| T |
13762513 |
tgatgactaataagctaattaaattgtttgataaaattagcggttcaactaactaat |
13762457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 7510813 - 7510860
Alignment:
| Q |
113 |
ctgataaactaataaaattgtttgataaatttagtggttcaactagct |
160 |
Q |
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|
||||||| ||||| ||| ||||||||||| |||| ||||||||||||| |
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|
| T |
7510813 |
ctgataagctaattaaagtgtttgataaaattagcggttcaactagct |
7510860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 9626589 - 9626636
Alignment:
| Q |
113 |
ctgataaactaataaaattgtttgataaatttagtggttcaactagct |
160 |
Q |
| |
|
||||||||||||| ||| |||||| |||| |||| ||||||||||||| |
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| T |
9626589 |
ctgataaactaattaaagtgtttggtaaaattagcggttcaactagct |
9626636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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