View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase24 (Length: 217)
Name: NF0235Ase24
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase24 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 14696100 - 14696303
Alignment:
| Q |
7 |
taatctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaagtgt |
106 |
Q |
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| T |
14696100 |
taatctaaagaaaagaaaataacagaatcttaaatttaggaaagaaaataaaccaaactataaaattaggaaagggaattaactaaatgtaatcaagtgt |
14696199 |
T |
|
| Q |
107 |
aactcttctttctcacaaaatctctcgtctaactaggtgtatcatccaacatgtcgtaacaaatcaccctcaccatgtcattgcttgaaattgaagtaat |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14696200 |
aactcttctttctcaaaaaatctctcgtctaactaggtgtatcatccaacatgtggtaacaaatcaccctcaccatgtcattgcttgaaattgaagtaat |
14696299 |
T |
|
| Q |
207 |
gtat |
210 |
Q |
| |
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|||| |
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|
| T |
14696300 |
gtat |
14696303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 27758316 - 27758413
Alignment:
| Q |
7 |
taatctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaagt |
104 |
Q |
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||||||||| ||| | ||||||| |||| |||||||| ||||||||||||| |||| |||||||||| ||| |||| ||||| || |||| ||||| |
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| T |
27758316 |
taatctaagaaaagggaaataacataatcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagt |
27758413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 28984025 - 28984103
Alignment:
| Q |
11 |
ctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaac |
89 |
Q |
| |
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||||||||| ||||||||| |||| ||||| || |||||||||||||| ||| ||||||||| |||||||| |||| |
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| T |
28984025 |
ctaaggaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataac |
28984103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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