View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235Ase26 (Length: 455)

Name: NF0235Ase26
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235Ase26
NF0235Ase26
[»] chr3 (3 HSPs)
chr3 (9-211)||(37318011-37318211)
chr3 (267-384)||(37317834-37317955)
chr3 (267-344)||(38889292-38889370)
[»] chr1 (2 HSPs)
chr1 (267-343)||(51051587-51051664)
chr1 (267-344)||(37213955-37214033)
[»] chr4 (3 HSPs)
chr4 (269-345)||(4061001-4061078)
chr4 (278-309)||(44454371-44454402)
chr4 (278-342)||(7678171-7678235)
[»] chr7 (1 HSPs)
chr7 (278-309)||(7441627-7441658)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 37318211 - 37318011
Alignment:
Q  9 ctacatgcacacaccacacattgcaatgaagtggaagaagtatgggtgacgattgacgaatgnnnnnnnnnnnttaaacttatctctaaatgaattcaag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||| ||||||||||||||||||||||    
T  37318211 ctacatgcacacaccacacattgcaatgaagtggaagaagtatgggtgacgattgacgaaagaaaaaaaaa--ttaaccttatctctaaatgaattcaag 37318114  T
Q  109 actaaataaatacaatgacttacatgaatgagtatatgacaatacagtaagagaaagtcttgcataatcacaagtttttggacacgctatttaggngcac 208  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||  ||||| |||| ||||||||| ||||    
T  37318113 actaaataaatacaatgacttacatgaatgagtatatggcaatacaataagagaaagtcttgcatgttcacaaaattttgaacacactatttaggtgcac 37318014  T
Q  209 aca 211  Q
    |||    
T  37318013 aca 37318011  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 384
Target Start/End: Complemental strand, 37317955 - 37317834
Alignment:
Q  267 ctctttctacctttctcaattatgtatgtgtgtctaaatttaggggccnaatatttgtatccaattaagtattttccatac----naggtttacnnggaa 362  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || ||||||||| | ||||||||||||||||||||     ||||||||  ||||    
T  37317955 ctctttctacctttcttaattatgtatgtgtgtctaaatttagtgtccaaatatttgtgttcaattaagtattttccatacaacaaaggtttacaaggaa 37317856  T
Q  363 gnaattagttagnacccttata 384  Q
      |||||||||| || ||||||    
T  37317855 ctaattagttagtacacttata 37317834  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 38889292 - 38889370
Alignment:
Q  267 ctctttctaccttt-ctcaattatgtatgtgtgtctaaatttaggggccnaatatttgtatccaattaagtattttcca 344  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | || |||| |||| | ||| |||||||||||||    
T  38889292 ctctttctaccttttctcaattatgtatgtgtgtctaaatttagtgtccaaatacttgtgttcaagtaagtattttcca 38889370  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 51051587 - 51051664
Alignment:
Q  267 ctctttctaccttt-ctcaattatgtatgtgtgtctaaatttaggggccnaatatttgtatccaattaagtattttcc 343  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | || |||| |||| ||||| ||||||||||||    
T  51051587 ctctttctaccttttctcaattatgtatgtgtgtctaaatttagtgtccaaatacttgtgtccaagtaagtattttcc 51051664  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 37214033 - 37213955
Alignment:
Q  267 ctctttctaccttt-ctcaattatgtatgtgtgtctaaatttaggggccnaatatttgtatccaattaagtattttcca 344  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | || |||| | |  ||||| |||||||||||||    
T  37214033 ctctttctaccttttctcaattatgtatgtgtgtctaaatttagtgcccaaatactcgagtccaagtaagtattttcca 37213955  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 4061001 - 4061078
Alignment:
Q  269 ctttctaccttt-ctcaattatgtatgtgtgtctaaatttaggggccnaatatttgtatccaattaagtattttccat 345  Q
    |||||||||||| ||||||| ||||||||||||||||||||| | || ||   |||| ||||| ||||||||||||||    
T  4061001 ctttctaccttttctcaattgtgtatgtgtgtctaaatttagtgtccaaactcttgtgtccaagtaagtattttccat 4061078  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 309
Target Start/End: Complemental strand, 44454402 - 44454371
Alignment:
Q  278 tttctcaattatgtatgtgtgtctaaatttag 309  Q
    ||||||||||||||||||||||||||||||||    
T  44454402 tttctcaattatgtatgtgtgtctaaatttag 44454371  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 7678171 - 7678235
Alignment:
Q  278 tttctcaattatgtatgtgtgtctaaatttaggggccnaatatttgtatccaattaagtattttc 342  Q
    ||||||||||||||||||||| |||||||||| | || ||   |||| ||||| |||||||||||    
T  7678171 tttctcaattatgtatgtgtgcctaaatttagtgtccaaacccttgtgtccaagtaagtattttc 7678235  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 309
Target Start/End: Complemental strand, 7441658 - 7441627
Alignment:
Q  278 tttctcaattatgtatgtgtgtctaaatttag 309  Q
    ||||||||||||||||||||||||||||||||    
T  7441658 tttctcaattatgtatgtgtgtctaaatttag 7441627  T

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