View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235Ase28 (Length: 732)

Name: NF0235Ase28
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235Ase28
NF0235Ase28
[»] chr6 (32 HSPs)
chr6 (8-642)||(10579426-10580061)
chr6 (224-720)||(6596538-6597036)
chr6 (156-647)||(7131558-7132050)
chr6 (156-623)||(7119080-7119547)
chr6 (22-684)||(19632228-19632888)
chr6 (22-628)||(6394653-6395259)
chr6 (15-536)||(6589119-6589640)
chr6 (145-617)||(6426423-6426895)
chr6 (142-419)||(6402769-6403046)
chr6 (147-546)||(6415880-6416279)
chr6 (142-543)||(6432070-6432471)
chr6 (159-546)||(6409932-6410319)
chr6 (26-542)||(6423010-6423526)
chr6 (22-182)||(6597042-6597208)
chr6 (154-419)||(6585150-6585415)
chr6 (142-463)||(7994051-7994372)
chr6 (156-463)||(6594475-6594782)
chr6 (144-305)||(14820604-14820765)
chr6 (148-305)||(14818297-14818454)
chr6 (144-546)||(6602991-6603390)
chr6 (223-308)||(11936299-11936384)
chr6 (223-308)||(11948279-11948364)
chr6 (554-628)||(6410345-6410419)
chr6 (226-316)||(14802329-14802419)
chr6 (436-546)||(14820893-14821003)
chr6 (131-197)||(28934947-28935013)
chr6 (554-611)||(6602908-6602965)
chr6 (582-686)||(7993809-7993914)
chr6 (216-316)||(9411338-9411438)
chr6 (434-470)||(9411556-9411592)
chr6 (22-81)||(14820482-14820541)
chr6 (146-179)||(12102219-12102252)
[»] chr3 (6 HSPs)
chr3 (156-546)||(51764226-51764616)
chr3 (147-546)||(13470518-13470917)
chr3 (144-479)||(51113634-51113969)
chr3 (145-255)||(514805-514915)
chr3 (434-538)||(514519-514623)
chr3 (228-307)||(51120918-51120997)
[»] chr7 (8 HSPs)
chr7 (217-546)||(10614577-10614906)
chr7 (22-546)||(15091937-15092461)
chr7 (154-270)||(10170143-10170259)
chr7 (154-270)||(10177668-10177784)
chr7 (580-623)||(10169827-10169870)
chr7 (580-623)||(10177352-10177395)
chr7 (580-614)||(10167380-10167414)
chr7 (143-200)||(15106479-15106536)
[»] chr5 (8 HSPs)
chr5 (147-389)||(20478025-20478267)
chr5 (163-308)||(41901559-41901704)
chr5 (144-307)||(32267386-32267549)
chr5 (169-307)||(41889579-41889717)
chr5 (434-477)||(41901390-41901433)
chr5 (557-646)||(20477749-20477839)
chr5 (558-608)||(32267818-32267868)
chr5 (434-479)||(41889404-41889449)
[»] chr1 (13 HSPs)
chr1 (228-546)||(19468285-19468603)
chr1 (558-712)||(33160850-33161006)
chr1 (565-712)||(29658553-29658702)
chr1 (565-712)||(29691068-29691217)
chr1 (565-712)||(29718580-29718729)
chr1 (226-314)||(43634900-43634988)
chr1 (154-310)||(9580990-9581148)
chr1 (234-307)||(52082582-52082655)
chr1 (211-310)||(9586617-9586716)
chr1 (580-623)||(19468196-19468239)
chr1 (564-673)||(30827447-30827557)
chr1 (438-479)||(9581276-9581317)
chr1 (438-479)||(9586844-9586885)
[»] chr4 (20 HSPs)
chr4 (154-419)||(53761685-53761947)
chr4 (154-305)||(8184057-8184208)
chr4 (363-546)||(21834164-21834347)
chr4 (228-477)||(8186943-8187195)
chr4 (145-307)||(546825-546987)
chr4 (148-475)||(55908582-55908912)
chr4 (155-255)||(370842-370942)
chr4 (145-314)||(55505126-55505292)
chr4 (161-307)||(640843-640989)
chr4 (145-308)||(553391-553554)
chr4 (228-318)||(1548438-1548528)
chr4 (582-686)||(3438276-3438381)
chr4 (154-254)||(1517574-1517674)
chr4 (228-307)||(7307855-7307934)
chr4 (145-302)||(1537797-1537954)
chr4 (145-302)||(1513437-1513591)
chr4 (145-200)||(12121589-12121644)
chr4 (436-482)||(570737-570783)
chr4 (358-463)||(3438432-3438540)
chr4 (560-617)||(10634131-10634188)
[»] chr8 (7 HSPs)
chr8 (144-307)||(27922419-27922582)
chr8 (217-305)||(34936190-34936278)
chr8 (157-307)||(17628039-17628189)
chr8 (154-308)||(18315297-18315451)
chr8 (436-537)||(17627851-17627952)
chr8 (223-308)||(32151291-32151376)
chr8 (223-308)||(28246319-28246402)
[»] chr2 (2 HSPs)
chr2 (145-305)||(45245112-45245272)
chr2 (148-475)||(1037518-1037848)
[»] scaffold0041 (1 HSPs)
scaffold0041 (144-305)||(39095-39256)
[»] scaffold0295 (1 HSPs)
scaffold0295 (153-305)||(651-803)
[»] scaffold0807 (1 HSPs)
scaffold0807 (155-310)||(1486-1644)


Alignment Details
Target: chr6 (Bit Score: 565; Significance: 0; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Complemental strand, 10580061 - 10579426
Alignment:
Q  8 atatgctatattataacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10580061 atatgctatattataacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaaggcatccatgacgcaagaagaatcc 10579962  T
Q  108 cctatttatcctccttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgaccctttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579961 cctatttatcctccttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgaccctttta 10579862  T
Q  208 cagtttttcagtaa-tagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcc 306  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  10579861 cagtttttcagtaaatagttccaaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcc 10579762  T
Q  307 agctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10579761 agctggggaattacaatctttattctaagtcgcttcactcttggacatttggctaagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaa 10579662  T
Q  407 taccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10579661 taccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacaatgaatt 10579562  T
Q  507 tctacccaaatagagagattttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaa 606  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  10579561 tctacccaaatagagagattttaattga-ggtatacaccagaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaa 10579463  T
Q  607 ggacaatttcttacgaggg-aaacaaggctgattctg 642  Q
    ||||||||||||||||||| |||||||||||||||||    
T  10579462 ggacaatttcttacgagggaaaacaaggctgattctg 10579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 224 - 720
Target Start/End: Complemental strand, 6597036 - 6596538
Alignment:
Q  224 gtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaat 323  Q
    ||||||| |||||| |||||||||||||||| |  || ||||||| |||||| || ||||||  ||||||||||||||||||||||||||||||| |||     
T  6597036 gtttcaagagcccagaacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaa 6596937  T
Q  324 ctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaa-cttgaaaaataccttcagatatgta 422  Q
     ||||||  |||||||||||| |||| ||||| ||||  ||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||| ||||     
T  6596936 gtttatttcaagtcgcttcacacttgaacattcggctcagttcaaatgcttaatcttatcacatct-cctgaaaacttgacaaataccttcagaaatgtt 6596838  T
Q  423 ttcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagaga 522  Q
     |    || ||  || ||||||||||||||||| || ||||||||||||||  |||||||  |||||| || |||| |  ||||||||||||||||||||    
T  6596837 attattagaatataagtcaagcagctgcaaattaggaaaaaaggaagctaatcttataatattttcattacttaaccaaaaatttctacccaaatagaga 6596738  T
Q  523 gattttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacga 622  Q
    || |||||||||||||||||| |||| ||| |||||||||   ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  6596737 gactttaattgagggtatacatcagaattctctacactctccgtcccaatagctgtgttttgcattttgatctcactaagcgaaggacaatttcttacga 6596638  T
Q  623 ggg-aaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcacc-anaaacnaagagaactcggcaacatgtgtatcatt 720  Q
    ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||| | |||||||||||||||||    
T  6596637 gggaaaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgtgtatcatt 6596538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 156 - 647
Target Start/End: Original strand, 7131558 - 7132050
Alignment:
Q  156 ttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatc 255  Q
    |||||||||||||||| |||||||||| ||| | || ||||||||    | ||| | |||||||||||||| ||||||||| ||||||||||| ||||||    
T  7131558 ttgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 7131657  T
Q  256 gaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatt 355  Q
      ||  ||||||| |||||| || || |||| ||||||||||||||||||||||||| |||  ||||  || |||| |||| |||||||||||| ||| |    
T  7131658 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagt 7131757  T
Q  356 tggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaatt 455  Q
     ||||| ||||||||| |||||||||  |||||| | | |||||||| ||||||||||||||||||  | |||||||||||||||||| || || |||||    
T  7131758 gggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaatt 7131857  T
Q  456 ggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcact 555  Q
    |||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| ||||||||||| ||||| ||||| ||||||| ||| ||| ||    
T  7131858 ggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaattccct 7131957  T
Q  556 acactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaa-acaaggctgattctgtgagc 647  Q
    ||||||| |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| ||||| ||| |||||||| |||||||||||    
T  7131958 acactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagc 7132050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 156 - 623
Target Start/End: Original strand, 7119080 - 7119547
Alignment:
Q  156 ttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatc 255  Q
    |||||||||||||||| |||||||||| ||| | || ||||||||    | ||| | |||||||||||||| ||||||||| ||||||||||| ||||||    
T  7119080 ttgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatc 7119179  T
Q  256 gaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatt 355  Q
      ||  ||||||| |||||| || || |||| ||||||||||||||||||||||||| |||  ||||  || |||| |||| |||||||||||| ||| |    
T  7119180 acatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagt 7119279  T
Q  356 tggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaatt 455  Q
     ||||| ||||||||| |||||||||  |||||| | | |||||||| ||||||||||||||||||  | |||||||||||||||||| || || |||||    
T  7119280 gggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaatt 7119379  T
Q  456 ggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcact 555  Q
    |||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| ||||||||||| ||||| ||||| ||||||| ||| ||| ||    
T  7119380 ggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaattccct 7119479  T
Q  556 acactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag 623  Q
    ||||||| |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| |||||    
T  7119480 acactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgag 7119547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 22 - 684
Target Start/End: Original strand, 19632228 - 19632888
Alignment:
Q  22 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcccctatttatcctcc 121  Q
    |||||||||||||||||| ||||||||||||   |||||||||  |||||||||||||||| |||||||||||||||| ||| |  |||| || |    |    
T  19632228 aacaaaaacaacttacagggttcaaacttcataatagcattttcggaatactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcac 19632327  T
Q  122 ttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaa 221  Q
    || |||  | |||  |||| ||||||||  | |||||| |||||||||||||||| ||||| |||||||||| |||||   |   ||| |||||||||||    
T  19632328 ttgaatgaatatcccccaaataaatctccttcagttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaa 19632427  T
Q  222 tagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattaca 321  Q
     |||| ||||||||||||||||||||||||||||  | | |||   | |||||| || |||||||| ||||||| ||||||||| |||| ||||| || |    
T  19632428 gagttgcaaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactaga 19632527  T
Q  322 atctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgt 421  Q
    |  ||||||| |||| | || ||| ||| ||||   | || |||||||||| | ||||||| |||||||    |||||||| ||||| | | ||||||||    
T  19632528 aagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatcttacaacatctta---aaacttgacaaatagcattagatatgt 19632624  T
Q  422 attcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagag 521  Q
    | | ||||  ||||||||||||| ||| ||||||||| ||||| ||||| |||||| ||||| ||||||||| ||||  | |||||| ||||||||||||    
T  19632625 aatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagag 19632724  T
Q  522 agattttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacg 621  Q
    ||| |||||||||||||||||||||   ||| ||||||| | ||| | ||||| ||  ||||||||||||||||||||||| ||||||||||| || |||    
T  19632725 agactttaattgagggtatacaccaatattctctacactttcttttcaaatagatgcgttttccattttgatctcactaagtgaaggacaattactaacg 19632824  T
Q  622 ag-ggaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcac 684  Q
    || | |||||| | | ||||||||||| |  ||||   ||||||||| ||||| ||||||||||    
T  19632825 agcgaaaacaatgataattctgtgagcttccaacagtcattaaggttgatagacaccaaatcac 19632888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 22 - 628
Target Start/End: Original strand, 6394653 - 6395259
Alignment:
Q  22 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcccctatttatcctc- 120  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||| |  ||||||| ||||||| |  | | |||||||| || ||     
T  6394653 aacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaatagaagttccctattt-tcgtca 6394751  T
Q  121 cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagta 220  Q
    |||| ||| | |||  |||| | ||||||||| | ||||||||||||||||||||||||||  || ||||| | ||||||  ||||||| || |  |||     
T  6394752 cttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagtt 6394851  T
Q  221 atagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattac 320  Q
     || || ||||||||||||||||||||||||||||  | | || |||| |||||| ||  |||||| ||||||||||||||||||||||| ||||| | |    
T  6394852 gtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgc 6394951  T
Q  321 aatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatg 420  Q
    ||  || |||| | || | |||||| ||| |||    |||| ||||||||| |||| ||||| |||| |   | |||||||| ||||||||||||||||     
T  6394952 aaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatt 6395051  T
Q  421 tattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaataga 520  Q
    | |  ||||    |||||||||| ||||| ||||||||||||| |||||  |||||||| || ||||||||   |||| |  ||||| ||||||||||||    
T  6395052 tgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattatttcatctattaaccagtaatttgtacccaaataga 6395151  T
Q  521 gagattttaattgagggtatacaccagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttac 620  Q
    |||| ||||| ||||||||||||||||| | | | ||| ||| ||||||||||  ||| ||||||||||| |||||  ||||| ||||||| ||||| ||    
T  6395152 gagagtttaactgagggtatacaccagaatgcccaacagtctctttcccaatacatgtgttttccattttaatctcggtaagcaaaggacagtttctaac 6395251  T
Q  621 gagggaaa 628  Q
    ||| ||||    
T  6395252 gagtgaaa 6395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 536
Target Start/End: Complemental strand, 6589640 - 6589119
Alignment:
Q  15 atattataacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcccctattt 114  Q
    |||||| |||||||||||||||||| ||||| |||| |||  |||| ||| |||||||||| |||||  |||||||||| |  |||||| | ||||| ||    
T  6589640 atattaaaacaaaaacaacttacagtgttcatactttagcacagcaatttcagaatactagtaaagatggcatccatgatgggagaagatttccctagtt 6589541  T
Q  115 atcctccttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttt 214  Q
     |    |||||||  | |||  |||  |||||||||  |||| ||||||||||||||||||||||||| ||||||| ||  |||||    |||||   ||    
T  6589540 ttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagtt 6589441  T
Q  215 tcagtaatagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctgggg 314  Q
      ||| ||| || || ||||||   |||||| |||||||||  |||||||||||||||||  || ||||||| ||||||||||||||||||||||  |||    
T  6589440 gaagtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatggg 6589341  T
Q  315 aattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttca 414  Q
    || |||||  || |||| |||| |||||||| |   |||   ||||| |||||||||| ||||||||| ||||||||   | |||||| ||||||||| |    
T  6589340 aactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaataccttta 6589241  T
Q  415 gatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctaccca 514  Q
    |||||||  |  |||| ||| |||||||||| ||  ||||||||||||| |||||| |||||||| ||  || |||||| |||| |||||||| ||||||    
T  6589240 gatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttaccca 6589141  T
Q  515 aatagagagattttaattgagg 536  Q
    |||||||||| |||||||||||    
T  6589140 aatagagagactttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 145 - 617
Target Start/End: Original strand, 6426423 - 6426895
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||| ||| ||||||||||||||||||||||| ||||| || |||||| ||||||| | |||||| ||||  ||||||| || ||||| || ||||||||    
T  6426423 atctttcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaat 6426522  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcac 344  Q
    |||||||||||| ||| |  |||| |||||| |   |||| | |||||| |||||||||||||||| ||||| | |||  || |||| | || | |||||    
T  6426523 tctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcac 6426622  T
Q  345 tcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagc 444  Q
      ||| |||    |||| ||||||||| |||| ||||| |||| | | | |||||| | |||||||||||||||| |    ||||   |||||||||||     
T  6426623 gtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttcagatatttcacggcaaaccttcaaatcaagt 6426722  T
Q  445 agctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacac 544  Q
    ||||| ||||||||||||| ||||||  ||||||| || |||||||||| |||| ||||||||||||||| ||||||||| || ||||||||||||||||    
T  6426723 agctgtaaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaattgagggtatacac 6426822  T
Q  545 cagatttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttct 617  Q
    |||| |   ||| | | ||| ||||||| | |||   ||||||||| ||||||||||  |||||||| |||||    
T  6426823 cagaatgttctaaagtatttatcccaattgatgtgccttccattttaatctcactaattgaaggacagtttct 6426895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 142 - 419
Target Start/End: Original strand, 6402769 - 6403046
Alignment:
Q  142 taaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaac 241  Q
    ||||||||||| |||||||| |||||||||| |||||||||  ||||||| | ||||||  | | ||| | | ||| |||||||||||||||||||| ||    
T  6402769 taaatctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactac 6402868  T
Q  242 aattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgctt 341  Q
    ||||||||||||||  ||| ||||||| |||||| || || |||| ||||||||||||||| || || ||||||| | |||  ||||||| |||| ||||    
T  6402869 aattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagctt 6402968  T
Q  342 cactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatat 419  Q
    |||||||| |||    | || |||||||||| |||| |||| |||||| | | |||||||| ||||||||||||||||    
T  6402969 cactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttcagatat 6403046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 147 - 546
Target Start/End: Original strand, 6415880 - 6416279
Alignment:
Q  147 ctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattc 246  Q
    |||||| |||||||||||||| |||||||||||||| ||||||   | ||||||  | | |||   ||  |||||||||| ||||||||| | |||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 6415979  T
Q  247 tttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactc 346  Q
    |||||||||  ||| || ||||||||||  || ||||||| ||||||||||||||||||||| | ||||| |||||  |  |||| | || ||||||||     
T  6415980 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcactt 6416079  T
Q  347 ttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcag 446  Q
    ||  |||   ||||| ||||||||||  |||||||| |||| |   | |||||||| ||||||||||||||| |   |  |||  |||||||||||||||    
T  6416080 ttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcag 6416179  T
Q  447 ctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 546  Q
    |||||||||||||||   |||||  |||||||| ||   |||||| | |||| ||  |||| | |||||||||||||| |||||||||||||||||||||    
T  6416180 ctgcaaattggggaagttggaagaaaacattatgataccttcatcgcttaaccatttattttttcccaaatagagagactttaattgagggtatacacca 6416279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 142 - 543
Target Start/End: Original strand, 6432070 - 6432471
Alignment:
Q  142 taaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaac 241  Q
    ||||||| ||| | ||||||||| |||||||||||| |||| |||||||||| ||||||  | | ||| || | ||| ||||||| || |||||||||||    
T  6432070 taaatctttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaac 6432169  T
Q  242 aattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgctt 341  Q
    |||||||| |||||  ||| ||||||| |||||| ||  |||||| ||||||||||||||||| ||||| ||||| | |||  || |||| | || ||||    
T  6432170 aattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagctt 6432269  T
Q  342 cactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatca 441  Q
    |||| ||  ||| | ||||| ||||||||| ||||  |||| |||||| | | |||||||| |||||||||||  |||    |  ||   |  |||||||    
T  6432270 cacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttcatttatacgatgacaccaacgcaaatca 6432369  T
Q  442 agcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtata 541  Q
    ||  | |||||||||||||||| |||||| |||||||| ||| ||||||  | |||| |||||||   ||||||||||||||| ||||| ||||||||||    
T  6432370 agatgttgcaaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactgagggtata 6432469  T
Q  542 ca 543  Q
    ||    
T  6432470 ca 6432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 159 - 546
Target Start/End: Original strand, 6409932 - 6410319
Alignment:
Q  159 tgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatcgaa 258  Q
    |||||| |||| | |||||||||| |||||||||| ||||||  | | |||||| | ||  ||||||| |||||||| |||||||||||||||||||  |    
T  6409932 tgtgcatttttttgccacatgtttcactcccttctgtgtgacattatcacagttgtacaaaaatagttgcaaaagccgacaacaattctttgagatcaca 6410031  T
Q  259 tatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttgg 358  Q
    || || |||| |||||| ||  |||||| |||| |||||||||||| ||||| ||||| | |||  || |||| | || |||||||| ||   || | ||    
T  6410032 taaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaatagg 6410131  T
Q  359 ctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggg 458  Q
    ||| || ||||||||||| ||||| |||| |   | |||||||| |||||||||||||||| |  | ||||    |||||||||| || || ||||||||    
T  6410132 ctaagtccaaatgcttaagcttacaacatttctgtaaaacttgacaaataccttcagatatttgctggcaacccgtcaaatcaagtagttgtaaattggg 6410231  T
Q  459 gaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 546  Q
     |||| |||||| ||||  || || |||||||||| |||||||| |||   | ||||||||||||| |||||||||||||||||||||    
T  6410232 aaaaatggaagcaaacaaaatgattatttcatcacttaacgatgtattgtaatccaaatagagagactttaattgagggtatacacca 6410319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 26 - 542
Target Start/End: Original strand, 6423010 - 6423526
Alignment:
Q  26 aaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcccctatttatcctccttaa 125  Q
    |||||||||||||| |||||||||| ||| ||| | ||| ||||||||||||||||| ||||||| ||  ||||| || |  | ||||| |    ||||     
T  6423010 aaaacaacttacagtgttcaaactttagcatagaaatttcagaatactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttac 6423109  T
Q  126 atctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagt 225  Q
    ||  |||||  |||| ||||||||||| | |||||||||||||  ||||||| |||| | ||| || ||||| ||    | ||| | ||  |||||||||    
T  6423110 atgaaaatctcccaaataaatctctctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagt 6423209  T
Q  226 ttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatct 325  Q
    | ||||| |||||||||| |||||||||||| ||| |||||||||||    ||| |||||| ||||||||||||||||||||||| ||||| |  ||  |    
T  6423210 tgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagt 6423309  T
Q  326 ttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattc 425  Q
    | |||  | || ||||||||  |  ||| | ||||| ||||||||| |||| || || |||| | | | |||| ||| ||||||| ||| |||| |  |     
T  6423310 tcattgcacgtagcttcacttgttcacaataggctaagttcaaatgtttaagctcacgacatttccgtaaaacatgacaaataccatcaaatatttgatg 6423409  T
Q  426 gcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagat 525  Q
    ||||   ||||||||||| || |  ||||| ||||||| |||||| |||||||| || |||||||||| |||| | ||| |   |||||||||||||||     
T  6423410 gcaacccttcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagac 6423509  T
Q  526 tttaattgagggtatac 542  Q
    |||||||||||||||||    
T  6423510 tttaattgagggtatac 6423526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 6597208 - 6597042
Alignment:
Q  22 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcccctatttatcctcc 121  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||  || ||||||||| ||||||||||||||||||||||  |||| |||||   |    
T  6597208 aacaaaaacaactgacagagttcaaacttgagcatagcatttttagataaccagcaaagaaggcatccatgacgcaagaagaatttcctacttatctcac 6597109  T
Q  122 tta------aatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgttt 182  Q
    |||      ||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||    
T  6597108 ttaaatctgaatctaaatcacccaaataaatttctctaagttttgtgcagttttctaccacatgttt 6597042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 419
Target Start/End: Complemental strand, 6585415 - 6585150
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    |||||||||||  |||||||||||||||| | |||||||| ||||||  ||| |||   |||||||||||||| ||||||| || ||||| |||||||||    
T  6585415 agttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 6585316  T
Q  254 tcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggaca 353  Q
    ||  ||| ||||||| |||||| || ||||||| |||||||||||| ||||||| ||||| || || ||  ||||||| |||| |||||||||||| |||    
T  6585315 tcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaaca 6585216  T
Q  354 tttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatat 419  Q
        |  | |||||||||| |||| |||  |||||| | | |||| ||| ||||||||||||||||    
T  6585215 cccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttcagatat 6585150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 463
Target Start/End: Complemental strand, 7994372 - 7994051
Alignment:
Q  142 taaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaac 241  Q
    ||||||||| | ||||| ||||||||||||||||||||||| ||||||| ||  || ||    |||||   ||  |||||||||| |||||| ||| |||    
T  7994372 taaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaac 7994273  T
Q  242 aattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgctt 341  Q
    ||||||||||||||  |||||||||||  ||||  ||  |||||| ||||| |||||||||||| ||||  |||| |||||  || ||||  ||| ||||    
T  7994272 aattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagctt 7994173  T
Q  342 cactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatca 441  Q
    |||||||| ||| | |||||||||||||||| | ||||||| |||| | | | |||| | | ||||||||||||||||    | ||||| |||||||||     
T  7994172 cactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttcagatataccattgcaagaattcaaatcg 7994073  T
Q  442 agcagctgcaaattggggaaaa 463  Q
    |||| ||||||||| |||||||    
T  7994072 agcatctgcaaatttgggaaaa 7994051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 463
Target Start/End: Complemental strand, 6594782 - 6594475
Alignment:
Q  156 ttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatc 255  Q
    |||||||||||||||||||||||||||  |||||| || |||||     | ||| ||||  |||  |||||  |||||||||||||||||||||||||||    
T  6594782 ttgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattctttgagatc 6594683  T
Q  256 gaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatt 355  Q
      |  |||||| | |||||| || | ||||| |||||||| |||||||||||| | ||||| || ||  ||||||| | || |||||||||||| |||      
T  6594682 acacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacc 6594583  T
Q  356 tggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaatt 455  Q
     || || || ||||||  ||||||||  |||||| | | |||||||| |||||||||||||||| |  ||| ||    ||||||||||||||| |||| |    
T  6594582 cggataagtacaaatgtgtaatcttataacatctccttaaaacttgacaaataccttcagatatttgatcggaaaacctcaaatcaagcagctccaaagt 6594483  T
Q  456 ggggaaaa 463  Q
    ||||||||    
T  6594482 ggggaaaa 6594475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 14820604 - 14820765
Alignment:
Q  144 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaa 243  Q
    ||||||||| || ||||||||||||| |||||||||||| || ||||||| ||||||    ||||| ||||  ||||||| |  ||||||||||||||||    
T  14820604 aatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaa 14820703  T
Q  244 ttctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
    ||||| ||||||  ||| ||||||| || ||| || ||||||| ||| ||||||||||||||    
T  14820704 ttcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctc 14820765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 148 - 305
Target Start/End: Original strand, 14818297 - 14818454
Alignment:
Q  148 tctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattct 247  Q
    ||||| || ||||||||||||||||| |||||||| || ||||||| ||||||  | ||||| ||||  ||||||| |  |||||||||| |||||||||    
T  14818297 tctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattct 14818396  T
Q  248 ttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
    | ||||||  ||| ||||||| || ||| || ||||||| ||| ||||||||||||||    
T  14818397 tggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctc 14818454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 144 - 546
Target Start/End: Complemental strand, 6603390 - 6602991
Alignment:
Q  144 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaa 243  Q
    ||||| ||| |||||| |||||||||||||||||||||| ||||| |||| ||||||    | ||| | ||||| |||||||| ||||||||||  ||||    
T  6603390 aatctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaa 6603291  T
Q  244 ttctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttca 343  Q
     |||||||||||| ||| | ||||| |||||| ||   ||||| || ||||| ||||||||  |||| ||||| |||||  || ||| ||| |   ||||    
T  6603290 ctctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttcattttaaatttgttca 6603191  T
Q  344 ctcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaag 443  Q
    |   || |||  |||||| |||||||||  ||||| || || |||||| |  || |||  ||||||| |||||||   | || |||  ||||||||||||    
T  6603190 catctgtacaactggctaagttcaaatgtgtaatcatatcaaatcttcttacaaattgccaaataccatcagata---aatcacaatcattcaaatcaag 6603094  T
Q  444 cagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtataca 543  Q
     ||||||||| |||||| | | ||||| |||||||| ||  ||| | ||| |||| || ||||   ||| ||||||||||| |||||||||||||||| |    
T  6603093 tagctgcaaactggggatagaagaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaattgagggtatata 6602994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 11936384 - 11936299
Alignment:
Q  223 agtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    |||| ||||||||||| |||| ||||||||||| |||| |||| |||||| || ||| ||||| ||||||||| ||||||||||||    
T  11936384 agttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccag 11936299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 11948364 - 11948279
Alignment:
Q  223 agtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    |||| ||||||||||| |||| ||||||||||| |||| |||| |||||| || ||| ||||| ||||||||| ||||||||||||    
T  11948364 agttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccag 11948279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 554 - 628
Target Start/End: Original strand, 6410345 - 6410419
Alignment:
Q  554 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaa 628  Q
    ||||||||| ||||||||||  |||| ||| ||||||||||||| |||| |||||||||||||| ||||| ||||    
T  6410345 ctacactctctttcccaatacttgttcttttcattttgatctcattaagtgaaggacaatttctaacgagtgaaa 6410419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 14802329 - 14802419
Alignment:
Q  226 ttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaa 316  Q
    |||||||| ||||||||||||||||| |||  ||| ||||||| |||||| || ||||||| |||||| |||||||| |||| || |||||    
T  14802329 ttcaaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaa 14802419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 546
Target Start/End: Original strand, 14820893 - 14821003
Alignment:
Q  436 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgag 535  Q
    |||||||| ||||  ||||| ||||||| ||||||  |||  || || |||||||||  |||| |||||||   ||||||||||||||| || |||||||    
T  14820893 aaatcaagtagctttaaatttgggaaaatggaagcatacaaaatgattatttcatcatttaaccatgaattgtgacccaaatagagagacttcaattgag 14820992  T
Q  536 ggtatacacca 546  Q
    |||||||||||    
T  14820993 ggtatacacca 14821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 28934947 - 28935013
Alignment:
Q  131 aatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgt 197  Q
    |||||||||| || |||||||| ||||||||||| |||||||||||||| || ||||| || |||||    
T  28934947 aatcatccaaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcctttttttgt 28935013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 611
Target Start/End: Complemental strand, 6602965 - 6602908
Alignment:
Q  554 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggaca 611  Q
    ||||| ||| |||||||||| |||| | ||||||||||||||||||||| ||||||||    
T  6602965 ctacattctctttcccaatatctgtgtcttccattttgatctcactaagtgaaggaca 6602908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 686
Target Start/End: Complemental strand, 7993914 - 7993809
Alignment:
Q  582 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaa-caaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 680  Q
    |||||||||||| |||| ||| || ||||| ||||| ||||| |||| ||||||||||||||||||| |   |||   | ||||||||||||| ||||||    
T  7993914 ttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaa 7993815  T
Q  681 tcacca 686  Q
    ||||||    
T  7993814 tcacca 7993809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 9411338 - 9411438
Alignment:
Q  216 cagtaatagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctgggga 315  Q
    |||||| |||| |||||| |||| ||||||||||||||||  ||| ||| ||| |||    ||   ||||||||||||||||||||||||||||| ||||    
T  9411338 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttggga 9411437  T
Q  316 a 316  Q
    |    
T  9411438 a 9411438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 9411556 - 9411592
Alignment:
Q  434 tcaaatcaagcagctgcaaattggggaaaaaggaagc 470  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagc 9411592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 14820482 - 14820541
Alignment:
Q  22 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaaga 81  Q
    |||||||||||||||||| ||||||||||||||   ||| ||| | ||||||||||||||    
T  14820482 aacaaaaacaacttacagtgttcaaacttcagcaacgcaatttcataatactagcaaaga 14820541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 12102219 - 12102252
Alignment:
Q  146 tctctctaagttgtgtgcagttttctaccacatg 179  Q
    ||||||| ||||||||||||||||||||||||||    
T  12102219 tctctctcagttgtgtgcagttttctaccacatg 12102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 1e-74; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 156 - 546
Target Start/End: Complemental strand, 51764616 - 51764226
Alignment:
Q  156 ttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatc 255  Q
    ||||||||||||||| ||||||||||| ||||||||||   ||||  | | ||| | || ||||||||||| ||||||||| ||||||||||||||||||    
T  51764616 ttgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatc 51764517  T
Q  256 gaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatt 355  Q
    | ||| |||||||||||||| ||||||||| |||||||||  |||||||||||||  |||| | |||  || |||| |||| |||||||||||| |||||    
T  51764516 gcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacatt 51764417  T
Q  356 tggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaatt 455  Q
     || || |||||||||| ||||||||  |||||| | | |||||| | | | ||||| |||||||   | ||||| ||| ||||||||||||||||||||    
T  51764416 cggataggttcaaatgcctaatcttagaacatctccttaaaacttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaatt 51764317  T
Q  456 ggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 546  Q
    |||||||| |||||| |||||||| ||  ||||||||| |||| ||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  51764316 ggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagactttaattgagggtatacacca 51764226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 147 - 546
Target Start/End: Complemental strand, 13470917 - 13470518
Alignment:
Q  147 ctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattc 246  Q
    |||||| || ||||||||||| |||||||||||||| |||||||  | ||||||  | | |||   ||  |||||||||| |||||||||||||||||||    
T  13470917 ctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattc 13470818  T
Q  247 tttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactc 346  Q
    |||||||||  ||| |||||||||||||  || ||||||| ||||||||||||||||||||| | |||||  ||||  || |||| |||| ||||||||     
T  13470817 tttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcactt 13470718  T
Q  347 ttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcag 446  Q
    ||  ||| | ||||| |||||||||| ||||||||| |||| | | | |||||||| |||||||||  |||| |   | ||||  |||||||||||||||    
T  13470717 ttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttttgataagagattgcaacaattcaaatcaagcag 13470618  T
Q  447 ctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 546  Q
    ||||||||||||||||  |||||| |||||||| ||   |||||||| |||| ||  |||| | |||||||||||||| |||||||||||||||||||||    
T  13470617 ctgcaaattggggaaattggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagagagactttaattgagggtatacacca 13470518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 144 - 479
Target Start/End: Complemental strand, 51113969 - 51113634
Alignment:
Q  144 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaa 243  Q
    ||||||||| |||| |||||| |||||||||||||| || |||||||||| ||||||    | ||| ||||||||||| |||| ||||||||||||||||    
T  51113969 aatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaa 51113870  T
Q  244 ttctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttca 343  Q
     |||| ||||||  ||| ||||||| |||||| ||  |||||| ||||||||  ||||||||||| | ||||  | |||  || |||| |||| ||||||    
T  51113869 ctcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttca 51113770  T
Q  344 ctcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaag 443  Q
     | ||| ||| |  ||||  ||||||||| |||| |||| ||||||   | |||||||| |||||||||| ||||| |  | ||||  | | ||||||||    
T  51113769 gttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaag 51113670  T
Q  444 cagctgcaaattggggaaaaaggaagctaacattat 479  Q
     ||||||| ||||||||||| |||||| | ||||||    
T  51113669 aagctgcagattggggaaaatggaagcaatcattat 51113634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 514915 - 514805
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||||||| ||| ||||||||||||  |||||||| || |||||| ||| |||||  | || ||| |||| ||||||||||| |||||||||||| |||     
T  514915 atctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaac 514816  T
Q  245 tctttgagatc 255  Q
    |||| ||||||    
T  514815 tcttcgagatc 514805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 538
Target Start/End: Complemental strand, 514623 - 514519
Alignment:
Q  434 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattg 533  Q
    |||||||||  ||||||||||| |||||||  ||||| ||||||||||   ||||||| | |||  |||||||   | ||||||||||||||||||||||    
T  514623 tcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattg 514524  T
Q  534 agggt 538  Q
    |||||    
T  514523 agggt 514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 51120997 - 51120918
Alignment:
Q  228 caaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
    ||||||||||| |||| ||||||||||   ||||||| ||| |||||| ||| ||||||  |||||||||||||||||||    
T  51120997 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 51120918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 217 - 546
Target Start/End: Original strand, 10614577 - 10614906
Alignment:
Q  217 agtaatagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaa 316  Q
    |||||||||| ||||||||||| ||| ||||| ||||||  ||| |||||||||||||  || || |||| ||||||||||||||||||||| | |||||    
T  10614577 agtaatagttgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaa 10614676  T
Q  317 ttacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcaga 416  Q
      ||||  || |||| |||| |||||||| ||  ||| | ||||| |||||||||| ||||||||| |||| | | | |||||||| ||||||||||| |    
T  10614677 caacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttcata 10614776  T
Q  417 tatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaa 516  Q
    || |   | ||||  ||||||||||||||| |||||||||||||||  |||||| ||| |||||||   |||||| | |||| |   |||| | ||||||    
T  10614777 taagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttataatgccttcatcgcttaaccactgattttttcccaaa 10614876  T
Q  517 tagagagattttaattgagggtatacacca 546  Q
    |||||||| |||||||||||||||||||||    
T  10614877 tagagagactttaattgagggtatacacca 10614906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 546
Target Start/End: Complemental strand, 15092461 - 15091937
Alignment:
Q  22 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaacgcatccatgacgcaagaagaatcccctatttatcctcc 121  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||| |  ||||||| ||||| |||| | |  |||| || |    |    
T  15092461 aacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcac 15092362  T
Q  122 ttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaa 221  Q
    ||| ||  | ||    ||| | ||||||||| | ||||||||||||||||| ||||||||| ||||||   | ||||||  | | |||   ||  |||||    
T  15092361 ttacatggatataccgcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaa 15092262  T
Q  222 tagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattaca 321  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||  || ||||| | |||||| |||||||||||||||| ||||| | ||    
T  15092261 tagttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgca 15092162  T
Q  322 atctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgt 421  Q
    |  || |||| | || | ||||| |||  ||||   | || ||||||||| |||| ||||  |||| | | | |||||||| ||||||||| ||||||||    
T  15092161 aagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaacttgagaaataccttgagatatgt 15092062  T
Q  422 attcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagag 521  Q
      | ||||  |  ||||||||| ||||  || |||||||||| |||||| |  ||| | || |||||||||| ||||    ||||   | ||||||||||    
T  15092061 tatagcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatgatttcatcacttaaccggtaattgtgagccaaatagag 15091962  T
Q  522 agattttaattgagggtatacacca 546  Q
    ||| |||||||||||||||||||||    
T  15091961 agactttaattgagggtatacacca 15091937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 10170259 - 10170143
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    ||||||| ||||||||||  ||||||||| ||||| |||| ||||||    ||||| || ||||  |||||||||||||| |||||||||| ||||||||    
T  10170259 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttgaga 10170160  T
Q  254 tcgaatatagtgtttta 270  Q
    ||  ||| |||||||||    
T  10170159 tcacatagagtgtttta 10170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 10177784 - 10177668
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    ||||||| ||||||||||  ||||||||| ||||| |||| ||||||    ||||| || ||||  |||||||||||||| |||||||||| ||||||||    
T  10177784 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttgaga 10177685  T
Q  254 tcgaatatagtgtttta 270  Q
    ||  ||| |||||||||    
T  10177684 tcacatagagtgtttta 10177668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 10169870 - 10169827
Alignment:
Q  580 ttttccattttgatctcactaagcgaaggacaatttcttacgag 623  Q
    ||||||||||||||||||||||| ||||||||||| || |||||    
T  10169870 ttttccattttgatctcactaagtgaaggacaattcctaacgag 10169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 10177395 - 10177352
Alignment:
Q  580 ttttccattttgatctcactaagcgaaggacaatttcttacgag 623  Q
    ||||||||||||||||||||||| ||||||||||| || |||||    
T  10177395 ttttccattttgatctcactaagtgaaggacaattcctaacgag 10177352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 614
Target Start/End: Complemental strand, 10167414 - 10167380
Alignment:
Q  580 ttttccattttgatctcactaagcgaaggacaatt 614  Q
    ||||||||||||||||||||||| |||||||||||    
T  10167414 ttttccattttgatctcactaagtgaaggacaatt 10167380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 15106536 - 15106479
Alignment:
Q  143 aaatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgac 200  Q
    |||||||||| |||||| |||||||||||||| ||  ||| ||||||| |||||||||    
T  15106536 aaatctctctcagttgtatgcagttttctaccgcacatttcactccctcctttgtgac 15106479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 147 - 389
Target Start/End: Complemental strand, 20478267 - 20478025
Alignment:
Q  147 ctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattc 246  Q
    |||||| |||||||||||||||||||| ||||||||  |||| ||| |||||||  | |  || |||||||||| || || |||||||||||||||||||    
T  20478267 ctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattc 20478168  T
Q  247 tttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactc 346  Q
     ||||||||  | ||| |||||  ||||| || |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||| |||    
T  20478167 cttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctc 20478068  T
Q  347 ttggacatttggctatgttcaaatgcttaatcttaccacatct 389  Q
    || |||||   |||| |||||||||| | | ||||| ||||||    
T  20478067 ttcgacatccagctaagttcaaatgccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 163 - 308
Target Start/End: Complemental strand, 41901704 - 41901559
Alignment:
Q  163 cagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatcgaatata 262  Q
    ||||||||||||||||| || |||||||||||||||||    ||||| | ||  ||| | | ||||||||| ||||||||| |||||||||||  ||| |    
T  41901704 cagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaa 41901605  T
Q  263 gtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    ||| || |||||| ||||||||||||||||||||||||||||||||    
T  41901604 gtgcttcatcatcaacttttgtatatgacaagttcaacacctccag 41901559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 32267386 - 32267549
Alignment:
Q  144 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaa 243  Q
    ||||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||     ||||| ||||| ||| | | |||||||||||||||||||    
T  32267386 aatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaa 32267485  T
Q  244 ttctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
     |||||||||||  ||| |||| || |||||| ||| |||| | |||||||||||| |||||||    
T  32267486 ctctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctcca 32267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 169 - 307
Target Start/End: Complemental strand, 41889717 - 41889579
Alignment:
Q  169 tctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatcgaatatagtgttt 268  Q
    ||||||||||| || |||||||||||||||||    | ||| ||||| ||||| | |||| ||||||| |||||| |||||||||||  ||| |||||||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  269 tatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
     |||||| |||||||||||||| ||||||||||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctcca 41889579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 434 - 477
Target Start/End: Complemental strand, 41901433 - 41901390
Alignment:
Q  434 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacatt 477  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  41901433 tcaaatcaagcagctgcaaattggggaaaatggaagcgaacatt 41901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 646
Target Start/End: Complemental strand, 20477839 - 20477749
Alignment:
Q  557 cactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaa-acaaggctgattctgtgag 646  Q
    |||||| |||||| |||| ||| | ||||||||||||||||| ||| |||||||| ||||| || || ||| |||||||| ||||||||||    
T  20477839 cactctctttcccgatagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtgag 20477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 608
Target Start/End: Original strand, 32267818 - 32267868
Alignment:
Q  558 actctttttcccaatagctgttttttccattttgatctcactaagcgaagg 608  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||| |||||    
T  32267818 actctttttcccaatacatgtgtgttccattttgatctcactaagtgaagg 32267868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 41889449 - 41889404
Alignment:
Q  434 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattat 479  Q
    |||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  41889449 tcaaatcaagtagctgcaaattagggaaaatggaagcaaacattat 41889404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 228 - 546
Target Start/End: Complemental strand, 19468603 - 19468285
Alignment:
Q  228 caaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatcttt 327  Q
    |||||| |||||||| ||||||||||||  ||| ||||||| |||||| || ||||||| |||||| |||||||||||||||| ||||| |||||  ||     
T  19468603 caaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttc 19468504  T
Q  328 attctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgc 427  Q
    | || |||| | |||||||||| ||| | ||||| ||| |||||| |||| |||  ||| || | | |||||||| |||| ||||| |||||||  | ||    
T  19468503 actccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtggttgc 19468404  T
Q  428 aagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattt 527  Q
    | |  |||||||||||||||||||||||||| |||| |||||| |||||||| ||  ||||||| | |||| |||||||   | |||| |||||| | ||    
T  19468403 atgagttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactt 19468304  T
Q  528 taattgagggtatacacca 546  Q
    |||||||||| ||||||||    
T  19468303 taattgagggaatacacca 19468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 712
Target Start/End: Original strand, 33160850 - 33161006
Alignment:
Q  558 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaa-caaggctgattctgtgagccttgaacaa 656  Q
    ||||| ||||||||||| |||   |||||||||||| |||||||| |||||||| ||| | || || |||| ||| |||||||||||||||||  ||||     
T  33160850 actctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacat 33160949  T
Q  657 cgattaaggtttatagaaaccaaatca-ccanaaacnaagagaactcggcaacatgt 712  Q
    | ||||||||||||||| |||||| || | | |||| ||||||||||||||||||||    
T  33160950 ccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgt 33161006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 565 - 712
Target Start/End: Complemental strand, 29658702 - 29658553
Alignment:
Q  565 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag-ggaaacaaggctgattctgtgagccttgaacaacgattaa 663  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| | |||||| ||||||||||| ||| |  |||| | | |||    
T  29658702 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29658603  T
Q  664 ggtttatagaaaccaaatca-ccanaaacnaagagaactcggcaacatgt 712  Q
    |||||||||| ||||||| | | | |||| ||||||||||||||||||||    
T  29658602 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29658553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 565 - 712
Target Start/End: Complemental strand, 29691217 - 29691068
Alignment:
Q  565 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag-ggaaacaaggctgattctgtgagccttgaacaacgattaa 663  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| | |||||| ||||||||||| ||| |  |||| | | |||    
T  29691217 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29691118  T
Q  664 ggtttatagaaaccaaatca-ccanaaacnaagagaactcggcaacatgt 712  Q
    |||||||||| ||||||| | | | |||| ||||||||||||||||||||    
T  29691117 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29691068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 565 - 712
Target Start/End: Complemental strand, 29718729 - 29718580
Alignment:
Q  565 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag-ggaaacaaggctgattctgtgagccttgaacaacgattaa 663  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| | |||||| ||||||||||| ||| |  |||| | | |||    
T  29718729 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29718630  T
Q  664 ggtttatagaaaccaaatca-ccanaaacnaagagaactcggcaacatgt 712  Q
    |||||||||| ||||||| | | | |||| ||||||||||||||||||||    
T  29718629 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29718580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 43634900 - 43634988
Alignment:
Q  226 ttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctgggg 314  Q
    |||||||| |||| ||||||||||||| ||  ||| ||||||  ||| || || ||||||||||||||||||||| |||| ||||||||    
T  43634900 ttcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctctagctgggg 43634988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 310
Target Start/End: Original strand, 9580990 - 9581148
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    ||||||||||| |||||||||||| | || ||||| || |||||||| |  | ||  | ||||||||| ||   |||||| |||| ||||||||||||||    
T  9580990 agttgtgtgcaattttctaccacacgcttcactccattgtttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgaga 9581089  T
Q  254 tcgaatatagtgttttatcatcgactttt--gtatatgacaagttcaacacctccagct 310  Q
    ||  ||| || |||| |||||  ||||||  ||| ||||||||||||||||||| ||||    
T  9581090 tcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagct 9581148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 52082582 - 52082655
Alignment:
Q  234 cccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
    |||||||||| |||||||||||  ||| | ||||| |||||| | |||||| | ||||||||||||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 52082655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 9586617 - 9586716
Alignment:
Q  211 tttttcagtaatagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagct 310  Q
    |||||| |||| || | |||||| |||| ||||||| ||||| ||  ||| ||||||| |||||  || | |||||||||||||||||||||||| ||||    
T  9586617 tttttctgtaaaagatgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagct 9586716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 19468239 - 19468196
Alignment:
Q  580 ttttccattttgatctcactaagcgaaggacaatttcttacgag 623  Q
    ||||||||||||||||||||||| ||||||||||| || |||||    
T  19468239 ttttccattttgatctcactaagtgaaggacaattcctaacgag 19468196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 673
Target Start/End: Original strand, 30827447 - 30827557
Alignment:
Q  564 tttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag-ggaaacaaggctgattctgtgagccttgaacaacgatta 662  Q
    ||||||||||| ||| |   |||||||||| ||| |||| |||||||||||| | ||||| | |||||| ||||||||||| ||| |  |||| ||| ||    
T  30827447 tttcccaatagttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaacgagcgaaaacaaagctgattctgttagcttccaacatcgagta 30827546  T
Q  663 aggtttataga 673  Q
    |||||||||||    
T  30827547 aggtttataga 30827557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 9581276 - 9581317
Alignment:
Q  438 atcaagcagctgcaaattggggaaaaaggaagctaacattat 479  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattat 9581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 9586844 - 9586885
Alignment:
Q  438 atcaagcagctgcaaattggggaaaaaggaagctaacattat 479  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattat 9586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 154 - 419
Target Start/End: Complemental strand, 53761947 - 53761685
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    |||||||||||||||||| |||||||||| |||||||| |  |||||  | | ||| | ||||||||||| || ||||||||||| ||||||||| ||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgaga 53761849  T
Q  254 tcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggaca 353  Q
    ||  | | ||||||||||| |  ||||| ||| |||||||||||||| |||| |||| ||||| |||||  || |||| || | |||||||||||| |||    
T  53761848 tc--acagagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaaca 53761751  T
Q  354 tttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatat 419  Q
     | ||||| |||||||||| |||| |||| |||||| | | |||||||| ||||||||| ||||||    
T  53761750 ctcggctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctttagatat 53761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 8184208 - 8184057
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    ||||||||||| ||||||| |||||| || |||||||  | ||||| | ||| ||| |||| |||||| |||| |||||||||||||||| |||||||||    
T  8184208 agttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagttccaaaagcccacaacaactctttgaga 8184109  T
Q  254 tcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
    | | ||| |||| | ||||||| ||| |||||| ||||||||||||||||||    
T  8184108 ttgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctc 8184057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 363 - 546
Target Start/End: Complemental strand, 21834347 - 21834164
Alignment:
Q  363 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 462  Q
    |||||||||||||||||||| |||| | | | ||||||   |||||||||| ||||| | |  | ||| | |||||||||||||||| ||||||||||||    
T  21834347 gttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaa 21834248  T
Q  463 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 546  Q
    |  ||||| |||||||| ||  ||||||||  |||| ||||||| |  |||||| ||||||| |||||||||||||| ||||||    
T  21834247 attgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattgagggtacacacca 21834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 228 - 477
Target Start/End: Complemental strand, 8187195 - 8186943
Alignment:
Q  228 caaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatcttt 327  Q
    |||||||||||||||| ||||||| || | ||| |||||||||||||| ||| |||||| ||||||||||||||||||||| | || |||| |||  ||     
T  8187195 caaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttc 8187096  T
Q  328 attctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaatac---cttcagatatgtatt 424  Q
    ||||      ||   ||||||||||| | ||||| |||||||| | |||||| || ||||||     |||||||| ||||||   ||||||||||||  |    
T  8187095 attccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcat 8186996  T
Q  425 cgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacatt 477  Q
     ||||  | |||||||||||| ||||||||||||||| ||||||| |||||||    
T  8186995 agcaatgactcaaatcaagcaactgcaaattggggaataaggaagataacatt 8186943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 145 - 307
Target Start/End: Original strand, 546825 - 546987
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||||||| |||| |||||||||||||| ||||||||| |||||||||| ||||||      ||| | || |||||| | || ||||||||||||||||     
T  546825 atctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaac 546924  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
    |||||||||||  ||| ||||||| ||||| |||  |||||  ||||||||||| ||||||||    
T  546925 tctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctcca 546987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 148 - 475
Target Start/End: Complemental strand, 55908912 - 55908582
Alignment:
Q  148 tctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattct 247  Q
    ||||| ||||||||||||||||| || |||||||| || || |||| ||||||    | ||| |||| ||| || ||||  |||||||||||||||||||    
T  55908912 tctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattct 55908813  T
Q  248 ttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactct 347  Q
    ||||||||  ||| ||||||| |||||| ||   ||||| ||||||||| |||||||| |  |  |||| |  ||  |||||||||||| | ||||||||    
T  55908812 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 55908713  T
Q  348 tggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaatac---cttcagatatgtattcgcaagtattcaaatcaagc 444  Q
    || ||| | |||||  ||||||||  ||| ||||| |||||| | |  ||||| | ||||||   ||||||||||||  | ||| |   ||||||||||     
T  55908712 tgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaaga 55908613  T
Q  445 agctgcaaattggggaaaaaggaagctaaca 475  Q
    |  |||||||||||||||| |||||| ||||    
T  55908612 aattgcaaattggggaaaatggaagcaaaca 55908582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 370842 - 370942
Alignment:
Q  155 gttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagat 254  Q
    |||||||||||||||  |||||||| || |||||| |||||||||  | || ||| |||| ||||||||||| |||||||| ||||||| ||||||||||    
T  370842 gttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagat 370941  T
Q  255 c 255  Q
    |    
T  370942 c 370942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 314
Target Start/End: Complemental strand, 55505292 - 55505126
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||||||| ||||||||||||||||||| ||| ||||| |||||||||| ||||||    |  |  ||||||| ||| |  | |||||| |||| |||||    
T  55505292 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac---atcgctatttttcaataacaaatgcaaaagtccacgacaat 55505196  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctgggg 314  Q
    |||||||| ||  ||| ||||||  ||| || || |||||||||||||||||||||||||| || |||||    
T  55505195 tctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggg 55505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 307
Target Start/End: Original strand, 640843 - 640989
Alignment:
Q  161 tgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatcgaata 260  Q
    ||||||||||||||||||| || |||||||||||||| ||    | ||| | || |||||| || | |||||| ||||  |||||||||||| ||   ||    
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  261 tagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
     ||||||| |||||| || ||||||| ||||||||||||||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 553391 - 553554
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    ||||||||||||||||||||||||||||||||||| || ||||| || | ||||||     |||| |    ||  || |||| |||||||||| |||||     
T  553391 atctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaac 553490  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    ||||||| |||  ||  |||| || |||||| ||| ||||| ||||||||||||||||||||||    
T  553491 tctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccag 553554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 1548528 - 1548438
Alignment:
Q  228 caaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaatt 318  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||||| |   |||||| ||||||||||||||||||||| | |||||||    
T  1548528 caaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatt 1548438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 686
Target Start/End: Complemental strand, 3438381 - 3438276
Alignment:
Q  582 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaac-aaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 680  Q
    ||||||||| ||||||||||| ||||||||||| || | ||| ||||  |||||| ||| ||||||| | ||||||  | ||||||||||||| ||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaa 3438282  T
Q  681 tcacca 686  Q
    ||||||    
T  3438281 tcacca 3438276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 1517674 - 1517574
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    |||||||  ||||| |||||||||||  |||||||||||| ||||||    | ||| |||| |||||||||||||||||  |||| ||||||||||||||    
T  1517674 agttgtgcacagttctctaccacatgcctaactcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgaga 1517575  T
Q  254 t 254  Q
    |    
T  1517574 t 1517574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 7307855 - 7307934
Alignment:
Q  228 caaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
    |||||||| ||||||| |||||||||||  |  ||||| || |||||| |||| |||||||||||||||||| |||||||    
T  7307855 caaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctcca 7307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 302
Target Start/End: Complemental strand, 1537954 - 1537797
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||||||| ||||| ||||| ||||||| |||||  || |||||||||| ||||||    | |||   || |||||| |||| ||||||||||| ||||     
T  1537954 atctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaac 1537855  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacac 302  Q
     |||||||||   | | |||||||| ||||  || |||||||||||||||||||||||    
T  1537854 actttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacac 1537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 302
Target Start/End: Complemental strand, 1513591 - 1513437
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||||||| ||||||||||| ||||||| |||| | || |||||| ||| ||||||  |   |||   ||||||||  |||| ||||||||||| ||||     
T  1513591 atctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaat---acaacctttcagtatgagttgcaaaagcccacgacaac 1513495  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacac 302  Q
     |||||||||    || ||||||| |||||| || |||||| ||||||||||||||||    
T  1513494 actttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacac 1513437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 12121644 - 12121589
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgac 200  Q
    |||||||| ||||||||||| |||||||||||||| || |||||| ||| ||||||    
T  12121644 atctctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgac 12121589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 570737 - 570783
Alignment:
Q  436 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataat 482  Q
    |||||||| || |||||||||||||||| |||||| |||||||||||    
T  570737 aaatcaagtagttgcaaattggggaaaatggaagcaaacattataat 570783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 463
Target Start/End: Complemental strand, 3438540 - 3438432
Alignment:
Q  358 gctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgcaaat 454  Q
    |||| |||||||||  ||||||||| |||||| | | ||||||||| || ||||||   ||||||||| |||||     ||| |||||||||||||||||    
T  3438540 gctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaat 3438441  T
Q  455 tggggaaaa 463  Q
    |||||||||    
T  3438440 tggggaaaa 3438432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 617
Target Start/End: Complemental strand, 10634188 - 10634131
Alignment:
Q  560 tctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttct 617  Q
    |||||||||||||||  ||   ||||||||||||||||||||| |||||||| |||||    
T  10634188 tctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtttct 10634131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 27922419 - 27922582
Alignment:
Q  144 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaa 243  Q
    ||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||     ||||| ||||  ||| | | |||||||||||||||||||    
T  27922419 aatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaa 27922518  T
Q  244 ttctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
     |||||||||||  ||| |||| || |||||| || ||||||||||||||||||||||||||||    
T  27922519 ctctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctcca 27922582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 34936278 - 34936190
Alignment:
Q  217 agtaatagtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
    |||||||||| ||||||||||| |||| |||||| ||| | ||| |||||||||||||| ||| ||||||||||||||| |||||||||    
T  34936278 agtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctc 34936190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 157 - 307
Target Start/End: Complemental strand, 17628189 - 17628039
Alignment:
Q  157 tgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagatcg 256  Q
    |||||||||||||  | |||||| || |||||||| | |||||| | ||||||   ||  |||||||||||||| |||||| |||||||||||||||||     
T  17628189 tgtgtgcagtttttcaacacatgcttcactcccttgtctgtgacacctttacaaaattctagtaatagtttcaagagcccaaaacaattctttgagatca 17628090  T
Q  257 aatatagtgttttatcatcgacttttgtatatgacaagttcaacacctcca 307  Q
     |   |||| ||||||||| ||| | |||| ||||||||||||||||||||    
T  17628089 cacggagtgctttatcatcaactctagtatgtgacaagttcaacacctcca 17628039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 308
Target Start/End: Complemental strand, 18315451 - 18315297
Alignment:
Q  154 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgaga 253  Q
    |||||||||||||||||||||||||  ||  |||| |||| ||||||      ||||  || || ||| |||| |||||||| || |||| |||||||||    
T  18315451 agttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgaga 18315352  T
Q  254 tcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    ||  ||| |||| || |||||| |||||||||| |||||||||||||||||||||    
T  18315351 tcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccag 18315297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 537
Target Start/End: Complemental strand, 17627952 - 17627851
Alignment:
Q  436 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgag 535  Q
    ||||||||||| |||||||||||||||| |||||| |||||| | ||  ||||||| | || | |||||||   | ||||||||||||||||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag 17627853  T
Q  536 gg 537  Q
    ||    
T  17627852 gg 17627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 32151291 - 32151376
Alignment:
Q  223 agtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    |||| ||||||||||| |||| |||||||||||  ||| ||||||| |||||| |   ||||| |||||||||| |||||||||||    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccag 32151376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 28246402 - 28246319
Alignment:
Q  223 agtttcaaaagcccacaacaattctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccag 308  Q
    |||| ||||||||| | |||| ||||||||||| |||| |||| |||||  || ||| ||||| ||||||||| ||||||||||||    
T  28246402 agttgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccag 28246319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 145 - 305
Target Start/End: Complemental strand, 45245272 - 45245112
Alignment:
Q  145 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaat 244  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||| | ||||||    | ||| ||||||| |||||||| ||||||||||| ||||     
T  45245272 atctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaac 45245173  T
Q  245 tctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
    |||||||||||  ||  ||||||| |||||| ||  |||| | |||||| |||||||||||    
T  45245172 tctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctc 45245112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 148 - 475
Target Start/End: Complemental strand, 1037848 - 1037518
Alignment:
Q  148 tctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattct 247  Q
    ||||| ||||||||||||||||| || |||||||| || || |||| ||||||    | ||| |||| ||| || ||||  |||||||||||||||||||    
T  1037848 tctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattct 1037749  T
Q  248 ttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactct 347  Q
    ||||||||  ||| ||||||| |||||| ||   ||||| ||||||||| |||||||| |  |  |||| |  ||  |||||||||||| | ||||||||    
T  1037748 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 1037649  T
Q  348 tggacatttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaatac---cttcagatatgtattcgcaagtattcaaatcaagc 444  Q
    || | | | |||||  ||||||||  ||| ||||| |||||| | | |||||| | ||||||   ||||||||||||  | ||| |   ||||||||||     
T  1037648 tgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaaga 1037549  T
Q  445 agctgcaaattggggaaaaaggaagctaaca 475  Q
    |  |||||||||||||||| |||||| ||||    
T  1037548 aattgcaaattggggaaaatggaagcaaaca 1037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 39095 - 39256
Alignment:
Q  144 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaa 243  Q
    ||||||||| ||||| |||||||| | |||||||||||| ||||||||| ||||||| |    ||| |||| |||||  || | ||||||||||| ||||    
T  39095 aatctctctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccactacaa 39194  T
Q  244 ttctttgagatcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
     |||||||||||  ||| ||||||| |||||  || |||||| ||| |||||||||||||||    
T  39195 ctctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 803 - 651
Alignment:
Q  153 aagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgag 252  Q
    ||||||||||||||||||||| |||||||| || || |||| | ||||    | ||| |||| |||||| ||||  || ||||||||||||||||| |||    
T  803 aagttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgag 704  T
Q  253 atcgaatatagtgttttatcatcgacttttgtatatgacaagttcaacacctc 305  Q
    |||  ||| ||||||| |||||||||  |||||| ||||||||| ||||||||    
T  703 atcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctc 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 1644 - 1486
Alignment:
Q  155 gttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaatagtttcaaaagcccacaacaattctttgagat 254  Q
    ||||| |||||||||| || |||| ||| ||||| |||| | ||||||  | ||| ||| |||||  ||||| ||||| |||  ||||||||||||||||    
T  1644 gttgtttgcagttttccacgacatctttcactcctttctctatgacccaatcacaatttatcagtcttagttccaaaatccctgaacaattctttgagat 1545  T
Q  255 cgaatatagtgtt---ttatcatcgacttttgtatatgacaagttcaacacctccagct 310  Q
    |  ||| ||||||   | |||||| || ||||||| |||||||| ||||||||| ||||    
T  1544 cacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagct 1486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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