View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235Ase4 (Length: 82)

Name: NF0235Ase4
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235Ase4
NF0235Ase4
[»] chr7 (9 HSPs)
chr7 (8-76)||(9596081-9596148)
chr7 (8-76)||(9647044-9647111)
chr7 (8-76)||(9647580-9647647)
chr7 (8-76)||(40998864-40998931)
chr7 (8-76)||(41000724-41000791)
chr7 (9-76)||(7842649-7842715)
chr7 (8-76)||(24790094-24790161)
chr7 (8-76)||(24790160-24790227)
chr7 (8-76)||(23446634-23446701)
[»] chr6 (2 HSPs)
chr6 (8-76)||(12037064-12037131)
chr6 (8-74)||(12036988-12037053)
[»] chr4 (9 HSPs)
chr4 (8-76)||(13518069-13518136)
chr4 (8-76)||(13518605-13518672)
chr4 (8-76)||(9399264-9399331)
chr4 (8-76)||(15018285-15018352)
chr4 (8-76)||(15019925-15019992)
chr4 (8-76)||(46690480-46690547)
chr4 (8-76)||(39488795-39488862)
chr4 (31-76)||(21377195-21377240)
chr4 (31-72)||(22473673-22473714)
[»] chr3 (8 HSPs)
chr3 (8-76)||(5554436-5554503)
chr3 (8-76)||(5553170-5553237)
chr3 (8-76)||(23460174-23460241)
chr3 (8-76)||(47418621-47418688)
chr3 (32-76)||(16022797-16022841)
chr3 (8-76)||(16346606-16346673)
chr3 (8-76)||(25531608-25531675)
chr3 (8-68)||(47566448-47566507)
[»] chr8 (5 HSPs)
chr8 (9-76)||(17278319-17278385)
chr8 (8-76)||(8366079-8366146)
chr8 (11-76)||(17277384-17277448)
chr8 (8-76)||(6778299-6778366)
chr8 (8-76)||(17277649-17277716)
[»] scaffold0096 (1 HSPs)
scaffold0096 (8-76)||(22371-22438)
[»] chr5 (7 HSPs)
chr5 (8-76)||(245083-245150)
chr5 (8-74)||(38936689-38936754)
chr5 (29-76)||(29949579-29949626)
chr5 (29-76)||(29951217-29951264)
chr5 (8-76)||(21352732-21352799)
chr5 (20-76)||(21352590-21352645)
chr5 (8-68)||(16780584-16780642)
[»] chr2 (7 HSPs)
chr2 (8-76)||(22299662-22299729)
chr2 (8-76)||(22300541-22300608)
chr2 (8-76)||(24806929-24806997)
chr2 (8-76)||(24808785-24808853)
chr2 (8-76)||(18535947-18536014)
chr2 (8-72)||(24806061-24806125)
chr2 (8-76)||(31974138-31974205)
[»] chr1 (7 HSPs)
chr1 (8-76)||(36233280-36233347)
chr1 (8-76)||(36234001-36234068)
chr1 (8-76)||(20189442-20189509)
chr1 (10-76)||(24157698-24157763)
chr1 (29-73)||(48464002-48464049)
chr1 (8-76)||(20759078-20759142)
chr1 (8-76)||(20191075-20191142)
[»] scaffold0359 (1 HSPs)
scaffold0359 (7-72)||(8911-8975)
[»] scaffold0018 (1 HSPs)
scaffold0018 (8-76)||(729-797)
[»] scaffold0269 (1 HSPs)
scaffold0269 (8-76)||(2012-2079)
[»] scaffold0146 (1 HSPs)
scaffold0146 (8-76)||(31563-31630)
[»] scaffold0026 (2 HSPs)
scaffold0026 (8-76)||(86555-86622)
scaffold0026 (8-76)||(707-774)
[»] scaffold0021 (2 HSPs)
scaffold0021 (8-76)||(17629-17696)
scaffold0021 (8-76)||(27160-27227)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-76)||(54828-54896)
[»] scaffold0013 (1 HSPs)
scaffold0013 (7-76)||(241017-241085)
[»] scaffold0094 (1 HSPs)
scaffold0094 (31-76)||(13543-13588)
[»] scaffold0139 (1 HSPs)
scaffold0139 (35-76)||(4223-4264)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 4e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9596148 - 9596081
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
9596148 atgtgatcctaaaattctct-ctcttgacaataataataaagttattgtggaataaaagaaccaaatta 9596081  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9647111 - 9647044
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
9647111 atgtgatcctaaaattctct-ctcttgacaataataataaagttattgtggaataaaagaaccaaatta 9647044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9647647 - 9647580
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
9647647 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 9647580  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 40998931 - 40998864
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
40998931 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 40998864  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 41000791 - 41000724
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
41000791 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 41000724  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 7842649 - 7842715
Alignment:
9 tgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
7842649 tgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 7842715  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 24790094 - 24790161
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
24790094 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 24790161  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 24790227 - 24790160
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
24790227 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 24790160  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 23446634 - 23446701
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
23446634 atgtgatcctaatattctct-ctcttgaaaagaataataaagtcattgtggaataaaagaaccaaatta 23446701  T

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Target: chr6 (Bit Score: 53; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 12037131 - 12037064
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
12037131 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 12037064  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 12036988 - 12037053
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaat 74  Q
    |||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||    
12036988 atgtgatcctaaaattctct-ctcttaacaagaataataaagtcattgtggaataaaagaaccaaat 12037053  T

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Target: chr4 (Bit Score: 53; Significance: 4e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 13518136 - 13518069
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
13518136 atgtgatcctaaaattctct-ctcttgacaataataataaagttattgtggaataaaagaaccaaatta 13518069  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 13518672 - 13518605
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
13518672 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 13518605  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9399331 - 9399264
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
9399331 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 9399264  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 15018352 - 15018285
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
15018352 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 15018285  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 15019992 - 15019925
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
15019992 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 15019925  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 46690480 - 46690547
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| ||||||| |||||||||||||| | |||||||||||||||| ||||||    
46690480 atgtgatcctaaaattctct-ctcttgataagaataataaagtcagtgtggaataaaagaactaaatta 46690547  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 39488862 - 39488795
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| ||||||| |||||||||||| | ||| ||||||||||||||| |||||    
39488862 atgtgatcctaaaattctct-ctcttgaaaagaataataaattcattatggaataaaagaacctaatta 39488795  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 21377195 - 21377240
Alignment:
31 cttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||||||||| | | |||||||||||||||||||||    
21377195 cttgacaagaataataaagtcaatatggaataaaagaaccaaatta 21377240  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 22473673 - 22473714
Alignment:
31 cttgacaagaataataaagttattgtggaataaaagaaccaa 72  Q
    ||||||| |||||||||||| ||| |||||||||||||||||    
22473673 cttgacatgaataataaagtcattatggaataaaagaaccaa 22473714  T

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Target: chr3 (Bit Score: 53; Significance: 4e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 5554503 - 5554436
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
5554503 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 5554436  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 5553170 - 5553237
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||    
5553170 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtgaaataaaagaaccaaatta 5553237  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 23460174 - 23460241
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||||||    
23460174 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtagaataaaagaaccaaatta 23460241  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 47418688 - 47418621
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
47418688 atgtgatcctaatattctct-ctcttgaaaagaataataaagtcattgtggaataaaagaaccaaatta 47418621  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 16022841 - 16022797
Alignment:
32 ttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
16022841 ttgacaagaataataaagtcattgtggaataaaagaaccaaatta 16022797  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 16346606 - 16346673
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||| | ||||| |||| || |||||||||||||| |||||||||||||||||||||||||    
16346606 atgtgatcctaatattctct-ctctggaaaagaataataaagtcattgtggaataaaagaaccaaatta 16346673  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 25531608 - 25531675
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||| | ||||| ||| |||||||||||||||    
25531608 atgtgatcctaaaattctct-ctcttgacaagaataataaattcattgtagaaaaaaagaaccaaatta 25531675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 47566448 - 47566507
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaa 68  Q
    |||||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||    
47566448 atgtgatcctaaaattctctt-tcttgacaagaataataaagtcattgtggaataaaagaa 47566507  T

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Target: chr8 (Bit Score: 52; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 17278385 - 17278319
Alignment:
9 tgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
17278385 tgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 17278319  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 8366079 - 8366146
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
8366079 atgtgatcctaaaattctct-ctcttgacaagaataataaattcattgtggaataaaagaaccaaatta 8366146  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 17277384 - 17277448
Alignment:
11 tgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
17277384 tgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaataaaagaatcaaatta 17277448  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 6778366 - 6778299
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||| |||||    
6778366 atgtgatcctaaaattctctcc-ctttacaagaataataaagttattgtggaataaaagaaccgaatta 6778299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 17277649 - 17277716
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||  ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
17277649 atgtgatcctaaatttctct-ctcttgacaagaataataaagtcattatggaataaaagaaccaaatta 17277716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 22371 - 22438
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
22371 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 22438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 245150 - 245083
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
245150 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 245083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 38936689 - 38936754
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaat 74  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||    
38936689 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtgaaataaaagaaccaaat 38936754  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 29949579 - 29949626
Alignment:
29 ctcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
29949579 ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 29949626  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 29951217 - 29951264
Alignment:
29 ctcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
29951217 ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 29951264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 21352799 - 21352732
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||    
21352799 atgtgatcctaaaattctct-ctcttgaaaagaataataaagtcattatggaataaaagaacctaatta 21352732  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 21352590 - 21352645
Alignment:
20 aactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||    
21352590 aactctct-ctcttgaaaagaataataaagtcattatggaataaaagaacctaatta 21352645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 16780584 - 16780642
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaa 68  Q
    |||||||||||||| ||||| ||||||| || ||||||||||| ||||| |||||||||||    
16780584 atgtgatcctaaaattctct-ctcttgataaaaataataaagtcattgt-gaataaaagaa 16780642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 22299662 - 22299729
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
22299662 atgtgatcctaaaattctct-ctcttgacaagaataataaattcattgtggaataaaagaaccaaatta 22299729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 22300608 - 22300541
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
22300608 atgtgatcctaaaattctct-ctcttgacaagaataataaattcattgtggaataaaagaaccaaatta 22300541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 24806997 - 24806929
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaa-gttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||    
24806997 atgtgatcctaaaattctct-ctcttgacaagaataataaaagtcattgtggaataaaagaaccaaatta 24806929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 24808853 - 24808785
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataata-aagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
24808853 atgtgatcctaaaattctct-ctcttgacaagaataatagaagtcattgtggaataaaagaaccaaatta 24808785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 18536014 - 18535947
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
18536014 atgtgatcctaatattctct-ctcttgaaaagaataataaagtcattgtggaataaaagaaccaaatta 18535947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 24806061 - 24806125
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaa-gttattgtggaataaaagaaccaa 72  Q
    |||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||    
24806061 atgtgatcctaaaattctct-ctcttgacaagaataataaaagtcattgtggaataaaagaaccaa 24806125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 31974205 - 31974138
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||    
31974205 atgtgatcctaaaattctct-ctcttgaaaagaataataaagtcattatggaataaaagaacctaatta 31974138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 36233280 - 36233347
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
36233280 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 36233347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 36234068 - 36234001
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
36234068 atgtgatcctaaaattatct-ctcttgacaagaataataaagtcattgtggaataaaagaaccaaatta 36234001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 20189509 - 20189442
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||    
20189509 atgtgatcctaaaattctct-ctcttgaaaaaaataataaagtcattgtggaataaaagaaccaaatta 20189442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 24157763 - 24157698
Alignment:
10 gtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||    
24157763 gtgatcctaaaattctct-ctcttgaaaagaataataaagtcattatggaataaaagaacctaatta 24157698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 48464049 - 48464002
Alignment:
29 ctcttgacaagaata---ataaagttattgtggaataaaagaaccaaa 73  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||    
48464049 ctcttgacaagaataataataaagttattgtggaataaaagaaccaaa 48464002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 20759078 - 20759142
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| | |||||||||||||||||||| ||||||    |||||||||||||||    
20759078 atgtgatcctaaaattctctcc-cttgacaagaataataaagtcattgtg---aaaaagaaccaaatta 20759142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 20191142 - 20191075
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||| ||||||| | ||| ||||||| |||||||||||||| ||| | ||||||||||||| |||||    
20191142 atgtgaacctaaaattatct-ctcttgaaaagaataataaagtcattatagaataaaagaacctaatta 20191075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 46; Significance: 7e-18; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 8975 - 8911
Alignment:
7 aatgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaa 72  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||    
8975 aatgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgtggaatataagaaccaa 8911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 7e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 797 - 729
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataata-aagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
797 atgtgatcctaaaattctct-ctcttgacaagaataatagaagtcattgtggaataaaagaaccaaatta 729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 45; Significance: 3e-17; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 2079 - 2012
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||| |||||||||||||| || |||||||||||||||||||||||||    
2079 atgtgatcctaaaattctct-ctctcgacaagaataataatgtcattgtggaataaaagaaccaaatta 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 3e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 31563 - 31630
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
31563 atgtgatcctaatattctct-ctcttgaaaagaataataaagtcattgtggaataaaagaaccaaatta 31630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 45; Significance: 3e-17; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 86555 - 86622
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||| |||||||||||    
86555 atgtgatcctaaaattctct-cttttgacaagaataataaagtcattgtggaataaaggaaccaaatta 86622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 774 - 707
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||| | |||||||||| |||||||    
774 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcattgagaaataaaagaatcaaatta 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 45; Significance: 3e-17; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 17629 - 17696
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| | ||| |||||||||||||||||||    
17629 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcagtgttgaataaaagaaccaaatta 17696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 27160 - 27227
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||| ||||| |||||||||||||||||||||| | ||| |||||||||||||||||||    
27160 atgtgatcctaaaattctct-ctcttgacaagaataataaagtcagtgttgaataaaagaaccaaatta 27227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 54828 - 54896
Alignment:
8 atgtgatcctaaaactctctactcttgacaagaataataaa-gttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||  ||||| |||||||||||||||||||| || |||||||||||||||||||||||||    
54828 atgtgatcctaaagttctct-ctcttgacaagaataataaaagtcattgtggaataaaagaaccaaatta 54896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 241017 - 241085
Alignment:
7 aatgtgatcctaaaactctctactcttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||| ||||  |||||||||||||||||||    
241017 aatgtgatcctaaaattctct-ctcttaacaagaataataaagtcattgcagaataaaagaaccaaatta 241085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 13588 - 13543
Alignment:
31 cttgacaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
13588 cttgacaagaataataaagtcattatggaataaaagaaccaaatta 13543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 4223 - 4264
Alignment:
35 acaagaataataaagttattgtggaataaaagaaccaaatta 76  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
4223 acaagaataataaagtcattatggaataaaagaatcaaatta 4264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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