View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Ase6 (Length: 259)
Name: NF0235Ase6
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Ase6 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 1707936 - 1708181
Alignment:
| Q |
9 |
tattcgatagagttaatgaatcacaactcatttatcattcacttaacgcaattggtaacgattatgaacatcattaaccacgattttcaggtgttcaaat |
108 |
Q |
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| T |
1707936 |
tattcgatagagttaatgaatcacaactcatttatcattcacttaacgcaattggtaacgattatgaacatcattaaccacgattttcaggtgttcaaat |
1708035 |
T |
|
| Q |
109 |
aaa-tatacaagatagaaagcaaagaactgaaaaatagaaaatagtacctgagataaggagctaaataaacaagtgagtaaacagcataacgacgattac |
207 |
Q |
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| T |
1708036 |
aaaatatacacgatagaaagcaaagaactgaaaaatagaaaatagtacctgagataaggagctaaataaacaagtgagtaaacagcataacgacgattac |
1708135 |
T |
|
| Q |
208 |
cagtatcaagccacgcaaaaacccaactctacgatcaatcaaatta |
253 |
Q |
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| T |
1708136 |
cagtatcaagccacgcaaaaacccaactctacaatcaatcaaatta |
1708181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 11497565 - 11497599
Alignment:
| Q |
68 |
gattatgaacatcattaaccacgattttcaggtgt |
102 |
Q |
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| T |
11497565 |
gattttgaacatcattaaccacgattttcaggtgt |
11497599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 37494868 - 37494900
Alignment:
| Q |
73 |
tgaacatcattaaccacgattttcaggtgttca |
105 |
Q |
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| T |
37494868 |
tgaacatcattaaccacgattttcaggttttca |
37494900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 37494909 - 37494945
Alignment:
| Q |
73 |
tgaacatcattaaccacgattttcaggtgttcaaata |
109 |
Q |
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||||||||||||||||| |||||||||| |||||||| |
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| T |
37494909 |
tgaacatcattaaccacaattttcaggttttcaaata |
37494945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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