View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235B-Insertion-11 (Length: 284)
Name: NF0235B-Insertion-11
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235B-Insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 42807430 - 42807157
Alignment:
| Q |
8 |
gatttaacctgcgatgactcgttttgcagcatcttacttgacattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagag |
107 |
Q |
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| T |
42807430 |
gatttaacctgcaatgactcgttttgcagcatcttacttgatattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagag |
42807331 |
T |
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| Q |
108 |
tggaagtccggtaaactagcaaagagtaaagatgggatcattgtggaaaaggtggttaaggataacgtgttttggaaaaatgttatgaattgcatgagtg |
207 |
Q |
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| T |
42807330 |
tggaagtccggtaaacttgcaaagagtaaagatgggatcattgtggaaaaggcggttaaggataacgtgttttggaaaaatgttatgaattgcatgaggg |
42807231 |
T |
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| Q |
208 |
gtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgcaactctgt |
281 |
Q |
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| T |
42807230 |
gtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgcaactctgt |
42807157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 42765039 - 42764859
Alignment:
| Q |
40 |
cttacttgacattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaaga |
139 |
Q |
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| T |
42765039 |
cttacttgacattagagtgtttgcatgacaattacagagcacttattattatgttcacattgaaagaatggaagtccggtaaacttgcaaagagtaaaga |
42764940 |
T |
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| Q |
140 |
tgggatcattgtggaaaaggtggttaaggataacgtgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttac |
223 |
Q |
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| T |
42764939 |
tgggatcattgtggaaaaggcggttaaggataac---ttttggaaaaatgttatgatttgcatgaggggtgttttcccccttac |
42764859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 42764453 - 42764407
Alignment:
| Q |
235 |
cctccctgtgacggcttccccttgactcctcttccttgcaactctgt |
281 |
Q |
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| T |
42764453 |
cctccctgtgacggcttccccctgactcctcttccttgcaactctgt |
42764407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 33050657 - 33050384
Alignment:
| Q |
8 |
gatttaacctgcgatgactcgttttgcagcatcttacttgacattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagag |
107 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050657 |
gatttaacctgcaatgactcgttttgcagcatcttacttgaaattagagtgtttgcataacaattatagagcacttattattatgttcacattgaaagag |
33050558 |
T |
|
| Q |
108 |
tggaagtccggtaaactagcaaagagtaaagatgggatcattgtggaaaaggtggttaaggataacgtgttttggaaaaatgttatgaattgcatgagtg |
207 |
Q |
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| T |
33050557 |
tggaagtccggtaaacttgcaaagagtaaagatgggatcattgtggaaaaggcggttaaggataacgtgttttggaaaaatgttatgaattgcatgaggg |
33050458 |
T |
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| Q |
208 |
gtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgcaactctgt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050457 |
gtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgcaactctgt |
33050384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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