View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235B-Insertion-3 (Length: 1036)
Name: NF0235B-Insertion-3
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235B-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 852; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 8 - 1025
Target Start/End: Original strand, 50407787 - 50408840
Alignment:
| Q |
8 |
ttttatcctgtgtcggtcacttattgatagcctttgatgtgcaaaatggcctctattttgcttcagtaatcattggattttgttttggtgcacaatggcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50407787 |
ttttatcctgtgtcggtcacttattgatagcctttgatgtgcaaaatggcatctattttgcttcagtaatcattggattttgttttggtgcacaatggcc |
50407886 |
T |
|
| Q |
108 |
attggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaattggattatattttctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407887 |
attggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaattggattatattttctt |
50407986 |
T |
|
| Q |
208 |
aatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtacaaagaaaattgggtcaggaattgaattgtgtag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
50407987 |
aatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtaaaaagaaaattgggtcaggaattgaattgtgtag |
50408086 |
T |
|
| Q |
308 |
gagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaagtttta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50408087 |
gagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaaataagtttta |
50408186 |
T |
|
| Q |
408 |
taaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgacggcaagagaggaaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408187 |
taaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgacggcaagagaggaaag |
50408286 |
T |
|
| Q |
508 |
gaa------------acagtgatg----tgattcattgatgtataggggttgaa----------tgttgaatgttgattggtgtttcaatgttgatttat |
581 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50408287 |
gaagaagcaaaagctacagtgatgtgattgattcattgatgtataggggttgaatgttgaatgttgttgaatgttgattggtgtttgaatgttgatttat |
50408386 |
T |
|
| Q |
582 |
aagcaaatttcactaccactaggacgacaatgactaggaaccg-aaaaacaattcaatccatttttgtgtctatagtataggaccgctttctttttcaat |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408387 |
aagcaaatttcactaccactaggacgacaatgactaggaaccgaaaaaaaaattcaatccatttttgtgtctatagtataggaccgctttctttttcaat |
50408486 |
T |
|
| Q |
681 |
acccatctttcactgtaatcatgtgataaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcat |
780 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408487 |
acccatctttcactgtactcatgtgataaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcat |
50408586 |
T |
|
| Q |
781 |
tttcttgcgtgcaacattttgctgtctcagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgat |
880 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408587 |
tttcttgtgtccaacattttgctgtctcagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgat |
50408686 |
T |
|
| Q |
881 |
tacttgtaaaaagaat-aaaaatcacaa------tgatgaatccaattcagtgggagatact-aaaagagagctataaacttttaacaattgaaaatgag |
972 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
50408687 |
tacttgtaaaaagaataaaaaatcacaatcatattcatgaatccaattcagtgggagatactaaaaagagagctataaacttttaataattgaaaa-gag |
50408785 |
T |
|
| Q |
973 |
agcaaa--tagattctatgctattttattatattacttttaagcagtacatgtga |
1025 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408786 |
agcaaaataagattctatgctattttattatattacttttaagcagtacatgtga |
50408840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 32 - 428
Target Start/End: Original strand, 50385782 - 50386178
Alignment:
| Q |
32 |
tgatagcctttgatgtgcaaaatggcctctattttgcttcagtaatcattggattttgttttggtgcacaatggccattggtttttgccataatttcgga |
131 |
Q |
| |
|
||||||| |||||||||| | | || ||||| | |||||||| || |||||||||||||||||||| ||||||||||| |||||||||| || || || |
|
|
| T |
50385782 |
tgatagcatttgatgtgccagagggtctctacgtagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcaga |
50385881 |
T |
|
| Q |
132 |
gttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaattggattatattttcttaatgttagggtcgctggtcattta |
231 |
Q |
| |
|
| ||||| | ||||||||| |||||||| || ||||| | ||||| ||||| ||||||||||| | |||||||| | | ||||||||||||| |
|
|
| T |
50385882 |
actttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccccttggattatatgtgcttaatgtgaagatcgctggtcatttg |
50385981 |
T |
|
| Q |
232 |
tatgacaaagaagctaagaggcaattgattgaaaaaggagtacaaagaaaattgggtcaggaattgaattgtgtaggagcaagttgtttcagattgtctt |
331 |
Q |
| |
|
|||||||||||||| |||| ||||||| | | ||| ||||||| | || ||||||||||||||||| || | ||||| || || |||| |
|
|
| T |
50385982 |
tatgacaaagaagcaaagaagcaattggaagcacttggaaagcaaagaatagaagggcaggaattgaattgtgttggtgttgattgttacaagttatctt |
50386081 |
T |
|
| Q |
332 |
tcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaagttttataaaggtgatatatacaagag |
428 |
Q |
| |
|
||||||||||||| || || || || |||||||| || ||||||||||||| ||||| || || | |||||||| |||||||| ||||||||||| |
|
|
| T |
50386082 |
tcattattatcacagctgcaacattttttggtgctgttgtttcacttattttggtggctaggaccagaaagttttacaaaggtgacatatacaagag |
50386178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 50394201 - 50394419
Alignment:
| Q |
32 |
tgatagcctttgatgtgcaaaatggcctctattttgcttcagtaatcattggattttgttttggtgcacaatggccattggtttttgccataatttcgga |
131 |
Q |
| |
|
||||||| |||||||||| | | || ||||| | |||||||| || |||||||||||||||||||| ||||||||||| |||||||||| || || || |
|
|
| T |
50394201 |
tgatagcatttgatgtgccagagggtctctacgtagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcaga |
50394300 |
T |
|
| Q |
132 |
gttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaattggattatattttcttaatgttagggtcgctggtcattta |
231 |
Q |
| |
|
| ||||| | ||||||||| |||||||| || ||||| | ||||| |||||| ||||||||||| | |||||||| | | || |||||||||| |
|
|
| T |
50394301 |
actttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagatcactggtcatttg |
50394400 |
T |
|
| Q |
232 |
tatgacaaagaagctaaga |
250 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
50394401 |
tatgacaaagaggctaaga |
50394419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 50390926 - 50391141
Alignment:
| Q |
31 |
ttgatagcctttgatgtgcaaaatggcctctattttgcttcagtaatcattggattttgttttggtgcacaatggccattggtttttgccataatttcgg |
130 |
Q |
| |
|
|||||||| |||||||||| | | || |||||| | |||||||| || || ||||||||||||||||| |||||||| || |||||||||| || || | |
|
|
| T |
50390926 |
ttgatagcatttgatgtgccacagggtctctatgtagcttcagttattatcggattttgttttggtgctcaatggccgttactttttgccattatatcag |
50391025 |
T |
|
| Q |
131 |
agttgtttgggttgaaatattattcaactttgatgaactttggtggggtagctagtccaattggattatattttcttaatgttagggtcgctggtcattt |
230 |
Q |
| |
|
| | ||||| | ||||||||| |||||||| || ||||| | || | ||||||||||| |||||| | |||||||| | || |||||||||| |
|
|
| T |
50391026 |
aactctttggacttaaatattatgcaactttgtataattttggaagtataacaagtccaattggcttatatgtgcttaatgtggcgatcactggtcattt |
50391125 |
T |
|
| Q |
231 |
atatgacaaagaagct |
246 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
50391126 |
gtatgacaaagaagct |
50391141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 50394484 - 50394601
Alignment:
| Q |
315 |
ttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaagttttataaaggt |
414 |
Q |
| |
|
|||||||| || |||||||||||||| || || || || || |||||||| || ||||||||||||| ||| | || || | |||||||| |||||| |
|
|
| T |
50394484 |
ttgtttcaagttatctttcattattattacagctgcaacattttttggtgctgttgtttcacttattttggtgtctaggactagaaagttttacaaaggt |
50394583 |
T |
|
| Q |
415 |
gatatatacaagaggtac |
432 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
50394584 |
gacatatacaagaggtac |
50394601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 5e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 189 - 416
Target Start/End: Complemental strand, 41638089 - 41637862
Alignment:
| Q |
189 |
aattggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattgattgaaaaaggagtacaaagaaaattgggt |
288 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
41638089 |
aattggattatattttcttaatgttatggttactggtcatttatatgacaaagaagctaagaggcaattgattggaaaaggagaagaaagaaaattgggt |
41637990 |
T |
|
| Q |
289 |
caggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtgg |
388 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41637989 |
caggaattgaattgtgcaggagcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtgg |
41637890 |
T |
|
| Q |
389 |
ccagaacaattaagttttataaaggtga |
416 |
Q |
| |
|
| ||||||||||||||||||||| |||| |
|
|
| T |
41637889 |
ctagaacaattaagttttataaacgtga |
41637862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 302 - 438
Target Start/End: Complemental strand, 39628197 - 39628061
Alignment:
| Q |
302 |
gtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaa |
401 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||| | ||||| || | ||||||||||| |
|
|
| T |
39628197 |
gtgtgggagcaagttgtttcaaattgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaa |
39628098 |
T |
|
| Q |
402 |
gttttataaaggtgatatatacaagaggtaccgatca |
438 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39628097 |
gttttataaacgtgatatatacaagaggtaccgatca |
39628061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 41637847 - 41637755
Alignment:
| Q |
400 |
aagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgac |
492 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41637847 |
aagttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac |
41637755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 395
Target Start/End: Original strand, 41638119 - 41638221
Alignment:
| Q |
296 |
tgaattgtgtaggagcaagttgtttcagattgtctttcattattatca---ctgcagctactttgtttggtgccattatttcacttattttagtggccag |
392 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41638119 |
tgaattgtgtaggaacacgttgtttcaaattgtctttcattatcatcatcactctggctactttgtttggtgccattatttcacttattttagtggccag |
41638218 |
T |
|
| Q |
393 |
aac |
395 |
Q |
| |
|
||| |
|
|
| T |
41638219 |
aac |
41638221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 41638631 - 41638695
Alignment:
| Q |
402 |
gttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacgg |
466 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
41638631 |
gttttataaacgtgatatatacaagaggtaccggtcagagcaggtagaagttgaaggagctacgg |
41638695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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