View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235B-Insertion-4 (Length: 963)
Name: NF0235B-Insertion-4
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235B-Insertion-4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 324 - 963
Target Start/End: Complemental strand, 24562891 - 24562252
Alignment:
| Q |
324 |
gctaatattatactaacacaaatcccttgtcatgtttggcttctgtttcttctcaacttttctttcagtctatttgggtaagtgtctctatttaagatat |
423 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562891 |
gctaatattatactaacacaattcccttgtcatgtttggcttctgtttcttctcaacttttctttcagtctatttgggtaagtgtctctatttaagatat |
24562792 |
T |
|
| Q |
424 |
gtccaatctcttttcnnnnnnnnnnnnnnnnnnnngtgaaacaaagtatagatttgtgtgtttgaatttaatggcaggtggatatgataaagaagagaaa |
523 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24562791 |
gttcaatctcttttcttttctttttttttttttttgtgaaacaaagtatagatttgtgtgtttgaatttaatgccaggtggatatgataaagaagagaaa |
24562692 |
T |
|
| Q |
524 |
gctgctaggtcttatgatttagctgcacttaagtactgggggacatccaccactaccaactttccagtaagtccatttttcaactatacacttctaatgc |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562691 |
gctgctaggtcttatgatttagctgcacttaagtactgggggacatccaccactaccaactttccagtaagtccatttttcaactatacacttctaatgc |
24562592 |
T |
|
| Q |
624 |
cctaattcaaaaaagttgatttattaattacattttgtttttgtaggttagcaactatgagaaggaaatagatgaaatgaagcacatgacaagacaagaa |
723 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562591 |
cctaattcaaaaattttgatttattaattacattttgtttttgtaggttagcaactatgagaaggaaatagatgaaatgaagcacatgacaagacaagaa |
24562492 |
T |
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| Q |
724 |
tttgttgcctctattagaaggtaattaatttatgctattccaagtccattaataaatggttataataagagtcaatcttcaaagtaaaagcttatctagg |
823 |
Q |
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| T |
24562491 |
tttgttgcctctattagaaggtaactaatttatgcttttctaagtccattaataaatggtaataataagagtcaatcttcaaagt-aaagcttatctagg |
24562393 |
T |
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| Q |
824 |
ttttgaacttataaatttggttgaattaaatgcaggaaaagcagcggtttctcaaggggtgcatcaatgtaccgtggagttacaaggtgtaatattggat |
923 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562392 |
ttttgaacttataaatattgttgaattaaatgcaggaaaagcagcggtttctctaggggtgcatcaatgtaccgtggagttacaaggtgtaatattggat |
24562293 |
T |
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| Q |
924 |
cccattaatttttcttaatttt-atcatctaactttagtga |
963 |
Q |
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| T |
24562292 |
cacattaatttttcttaattttaatcatctaactttagtga |
24562252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 24563198 - 24562947
Alignment:
| Q |
8 |
actggaaggtatgaagctcacctttgggataacagctgtagacgggaaggacagtcgagaaaaggccgccaaggtaaacttaaaacatcgaattaataat |
107 |
Q |
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| T |
24563198 |
actggaaggtatgaagctcacctttgggataacagctgtagaagggaaggtcagtcgagaaaaggccgccaaggtaaacttaaaacatcgaattaataac |
24563099 |
T |
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| Q |
108 |
tcttaggcatggttttaaattacagtcgcaattacgctgcaaataattatattgcatttaaatacgactgagtcgaattttttggtgaaatgttgttgca |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||| |
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| T |
24563098 |
tcttaggcatggttttaaattacagtcgcaattatgctgcaaataattatattgcatttaaatacgaccgagtcaaatttgttggtgaaatcttgttgca |
24562999 |
T |
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| Q |
208 |
gagacatcaaaatcttttatactgcagttgcataccgcaatttaaaacatgc |
259 |
Q |
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| T |
24562998 |
gagacatcaaaatcttttatactgcagttgcataccgcaatttaaaacatgc |
24562947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 499 - 595
Target Start/End: Complemental strand, 53235177 - 53235081
Alignment:
| Q |
499 |
aggtggatatgataaagaagagaaagctgctaggtcttatgatttagctgcacttaagtactgggggacatccaccactaccaactttccagtaagt |
595 |
Q |
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|||||| |||||||| ||||||||||| ||||| |||||||| | ||||| || ||||||||||| || | |||||||||||||||||||||||| |
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| T |
53235177 |
aggtggctatgataaggaagagaaagcagctagagcttatgatcttgctgctctcaagtactggggtccaacgaccactaccaactttccagtaagt |
53235081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 731
Target Start/End: Complemental strand, 53234961 - 53234905
Alignment:
| Q |
675 |
caactatgagaaggaaatagatgaaatgaagcacatgacaagacaagaatttgttgc |
731 |
Q |
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| T |
53234961 |
caactatgagaaggagattgatgacatgaagaacatgactagacaagaatttgttgc |
53234905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 31399196 - 31399226
Alignment:
| Q |
225 |
tatactgcagttgcataccgcaatttaaaac |
255 |
Q |
| |
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| T |
31399196 |
tatactgcagttgcataccgcaatttaaaac |
31399226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 499 - 595
Target Start/End: Complemental strand, 41964954 - 41964858
Alignment:
| Q |
499 |
aggtggatatgataaagaagagaaagctgctaggtcttatgatttagctgcacttaagtactgggggacatccaccactaccaactttccagtaagt |
595 |
Q |
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|||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| || |||||||||||||| |||||||| |||||||| |||||| |
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| T |
41964954 |
aggtgggtatgacaaagaagagaaagcagctagggcttatgatttagcagcactaaaatactgggggacatctaccactacaaactttcccgtaagt |
41964858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 676 - 754
Target Start/End: Complemental strand, 41964732 - 41964654
Alignment:
| Q |
676 |
aactatgagaaggaaatagatgaaatgaagcacatgacaagacaagaatttgttgcctctattagaaggtaattaattt |
754 |
Q |
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||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
41964732 |
aactatgagaaggaagtagaagatatgaagcacatgacaagactagaatttgttgccgccataagaaggtaattaattt |
41964654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 41965302 - 41965229
Alignment:
| Q |
11 |
ggaaggtatgaagctcacctttgggataacagctgtagacgggaaggacagtcgagaaaaggccgccaaggtaa |
84 |
Q |
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| T |
41965302 |
ggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcagtcaagaaaaggacgtcaaggtaa |
41965229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 854 - 911
Target Start/End: Complemental strand, 41964480 - 41964423
Alignment:
| Q |
854 |
tgcaggaaaagcagcggtttctcaaggggtgcatcaatgtaccgtggagttacaaggt |
911 |
Q |
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||||| || ||||| || || |||||||||||||||||||| |||||||| ||||||| |
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| T |
41964480 |
tgcagaaagagcagtggattttcaaggggtgcatcaatgtatcgtggagtcacaaggt |
41964423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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