View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235B-Insertion-5 (Length: 732)
Name: NF0235B-Insertion-5
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235B-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Complemental strand, 39774566 - 39773832
Alignment:
| Q |
8 |
tgtatagatcaaataaaattatagattcacatgacaatgcagaatacagagaaaaatccaataaactatcaccgatgtggtcccagtcaaacacaacttt |
107 |
Q |
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| T |
39774566 |
tgtatagatcaaataaaattatagattcacatgacaaagcagaatacagagaaaaatccaataaactatcaccgatgtggtcc-agtcaaacacaacttt |
39774468 |
T |
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| Q |
108 |
cagagcataaactttcctttgaaataggatatcttaatttcactcaattgttttatttcaaaataaatagac------------cctctaatcatgtgtc |
195 |
Q |
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| T |
39774467 |
cagagcataaactttcctttgaaataggatatcttaatttcactcaattgttttatttcaaaataaatagactgtgtttaccaccctctaatcatgtgtc |
39774368 |
T |
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| Q |
196 |
tggaaaaaattactacaattcatagaaaagttaataatttgtctatcctttacaaatgaagacctacctctaataatcatatcctttcttaaaacttacg |
295 |
Q |
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| T |
39774367 |
cggaaaaaattac---aattcatagaaaagttaataatttgtctatcctttacaaatgaagacctccctctaat---catatcctttcttaaaatttaca |
39774274 |
T |
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| Q |
296 |
ggactacagattcaccaccactaaaaatttggaagtttaattttgagactaaatacaaatatgttgaggnnnnnnntaaccattgaagtctttatcctta |
395 |
Q |
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| T |
39774273 |
ggactacagattcaccaccactaaaaatttggaagtttaattttgagactaaatacaaatatgttgaggaaaaaaataaccattgaagtctttatcctta |
39774174 |
T |
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| Q |
396 |
aaaatcacaagacaatctcaataattttatttttagtagttcctaagacatgacattgagtttgaatatatgtgaacttgtcata-cacccttacaaaat |
494 |
Q |
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| T |
39774173 |
aaaatcacaagacaatctcaataattttatttttagtagttcctaagacatgacattgagtttgaatatatgtgaacttgtcataccacccttacaaaat |
39774074 |
T |
|
| Q |
495 |
attttgannnnnnnnagggataatggttaatagtcgtagataggtgattggcttttgtttacatggtcattagcgacaagtgtgaaggtttgactttgat |
594 |
Q |
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| T |
39774073 |
attttgattttttttagggataatggttaatagccgtagataagtgattggcttttgtttacatggtcattagcgacaagtgtgaaggtttgactttgat |
39773974 |
T |
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| Q |
595 |
tcaagtgttcactttgatttttgtggttagatttctggtgatatccctaaatttatgtggtct-----ttggtgttgttatgattttcttttggatgttt |
689 |
Q |
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| T |
39773973 |
tcaagtgttcactttgatttttgtggttagatttccggtgatagccctaaatttatatggtctttctattggtggtgttatgattttcttttggatgttt |
39773874 |
T |
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| Q |
690 |
cgtctatatacagtatctattttttatagttactgtctcctag |
732 |
Q |
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| T |
39773873 |
cgtttatata-tgtgtctgttttttatagttactgtctcctag |
39773832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 630
Target Start/End: Complemental strand, 34573191 - 34573145
Alignment:
| Q |
584 |
ttgactttgattcaagtgttcactttgatttttgtggttagatttct |
630 |
Q |
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| T |
34573191 |
ttgactttgatttaagtgttgactttgatttaagtggttagatttct |
34573145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 699
Target Start/End: Complemental strand, 34572362 - 34572321
Alignment:
| Q |
658 |
ttggtgttgttatgattttcttttggatgtttcgtctatata |
699 |
Q |
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| T |
34572362 |
ttggtgttgttatggttttcttttggatgttccgtccatata |
34572321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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