View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235B-Insertion-6 (Length: 693)
Name: NF0235B-Insertion-6
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235B-Insertion-6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 3822467 - 3822754
Alignment:
| Q |
8 |
aattatatcttgaaacatgaatggaaaaaactgaagtgtctttagttaagattgagtttgcctttaatacctcaaatttgattcatccattggccactcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822467 |
aattatatcttgaaacatgaatggaaaaaaatgaagtgtctt-agttaagattgagtttgcctttaatacctcaaatttgattcatccattggccactcc |
3822565 |
T |
|
| Q |
108 |
gatggtgggaatgatgagtggataagaatatataaggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822566 |
gatggtgggaatgatgagtggataagaatatatgaggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaat |
3822665 |
T |
|
| Q |
208 |
attggttcttaaattcagaattttcatttgactctgaccatacttttctagagagtctat------gatgagtggatttgaatacgcta |
290 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3822666 |
attggttcttaaattcaggattttcatttgactctgaccatacttttctagagagtctatgtattagatgagtggatttgaatacgcta |
3822754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 290 - 437
Target Start/End: Original strand, 3822907 - 3823054
Alignment:
| Q |
290 |
actcttagatgaggtatttcactagtcaaatgatgagttcaatttgttaataaacttcacttaagggcaattgttcggaagaatctcaaatttaattttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3822907 |
actcttagatgaggtatttcactagtcaaatgatgagttcaatttgttaataaacttcacttaagggcaatcgttcggaagaatctcaaatttaattttt |
3823006 |
T |
|
| Q |
390 |
gagtgaaacaatttttaactttgaaatcacatacagtgttgcaacgtt |
437 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
3823007 |
gagtgaaacaatctttaactttgaaatcacatatagtgttgcaacgtt |
3823054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 567 - 691
Target Start/End: Original strand, 3823191 - 3823315
Alignment:
| Q |
567 |
ggagaggagtggaggagaaaggataatggttgaaaatttgaaaacgagttaatggtattttcgccattttagattgttcaatccatacaatttcaacaat |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3823191 |
ggagaggagtggaggagaaaggataatggttgaaaatttgaaaatgagttaatggtattttcgccattttagattgttcgatccatacaatttcaacaat |
3823290 |
T |
|
| Q |
667 |
cgaattggtgattcaccttatgttt |
691 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
3823291 |
caaattggtgattcaccttatgttt |
3823315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1236 times since January 2019
Visitors: 2389