View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235B-Insertion-7 (Length: 687)

Name: NF0235B-Insertion-7
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235B-Insertion-7
NF0235B-Insertion-7
[»] chr8 (2 HSPs)
chr8 (135-687)||(38016131-38016680)
chr8 (11-43)||(38016696-38016728)
[»] chr1 (4 HSPs)
chr1 (179-437)||(16960945-16961202)
chr1 (179-434)||(25868707-25868961)
chr1 (460-516)||(26496545-26496601)
chr1 (505-573)||(26496619-26496686)
[»] chr3 (3 HSPs)
chr3 (179-440)||(46595069-46595329)
chr3 (505-626)||(46594317-46594437)
chr3 (460-516)||(46594455-46594511)
[»] chr6 (4 HSPs)
chr6 (179-439)||(4435509-4435768)
chr6 (246-434)||(4091797-4091984)
chr6 (505-626)||(4436401-4436521)
chr6 (460-516)||(4436327-4436383)
[»] chr5 (4 HSPs)
chr5 (179-358)||(37719392-37719570)
chr5 (165-420)||(30440559-30440804)
chr5 (505-626)||(37718639-37718759)
chr5 (460-515)||(37718778-37718833)
[»] chr4 (2 HSPs)
chr4 (254-452)||(47521067-47521264)
chr4 (460-516)||(47521828-47521884)
[»] scaffold0405 (1 HSPs)
scaffold0405 (599-633)||(13222-13256)


Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 135 - 687
Target Start/End: Complemental strand, 38016680 - 38016131
Alignment:
135 tgagtagagagtgaacatgttcagcaaagaatctcacatcaa-ttcagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaataca 233  Q
    ||||||||||||||||||||  | |||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||    
38016680 tgagtagagagtgaacatgtcgaacaaagaatctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaataca 38016581  T
234 ttgattttgctcacctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38016580 ttgattttgctcacctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtt 38016481  T
334 tatgtttatttggattaacgttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaaga 433  Q
    |        || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
38016480 t--------ttagattaacgttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtgattttgagaataaaaagtggtaaaaaga 38016389  T
434 atgga----gggttttgtttaatcaaaagaaattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttattttctttcacgtgcat 529  Q
    |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
38016388 atggatggagggttttgtttaatcaaaagaaattgttcaataaaaagatcacaagaacttacttgaggcaaatttcattcttattttctttcacgtgcat 38016289  T
530 ttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttcttctccaatttctgaatatgacaatg 629  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
38016288 ttcttaaatcaatgcatggaaaaggtaataactctcattatgattggaatttaaaattaactttgtgttgtttcttctccaatttctgaatatgacaatg 38016189  T
630 aggacaatattccattggaatttttaagtagttagatggaatttgcacatctgtttca 687  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
38016188 aggacaatattccattggaatttttaagtaattagatggaatttgcacatctgtttca 38016131  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 38016728 - 38016696
Alignment:
11 ttgacacggctcaaagcctacaaggctacaaaa 43  Q
    |||||||||||||||||||||||||||||||||    
38016728 ttgacacggctcaaagcctacaaggctacaaaa 38016696  T

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Target: chr1 (Bit Score: 143; Significance: 9e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 179 - 437
Target Start/End: Complemental strand, 16961202 - 16960945
Alignment:
179 cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat 278  Q
    |||||||||||||| ||||||||||||| ||||||||| |||| || |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
16961202 cagatctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtattcaatctat 16961103  T
279 ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt 378  Q
    | |||| || | ||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||   ||||||||||||||  | |||||||||||||    
16961102 cacaatctgatgtatgctaatttgttaattttagaattaaatatttgggtttatttatgtttatttaatttaacgttaaattaagtgaattttgtatttt 16961003  T
379 gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatgg 437  Q
    || | || |||||  |||||||||||  |||||||||||||||||||||||||||||||    
16961002 gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaatgg 16960945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 179 - 434
Target Start/End: Original strand, 25868707 - 25868961
Alignment:
179 cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat 278  Q
    |||||||| ||||| |||||||||| |||||||||||| |||| || |||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
25868707 cagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttatccaggtattcaatctat 25868806  T
279 ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt 378  Q
    | |||| || | ||||||||||| ||| ||||| |||||||||| ||||||| |||| |||||||||  ||||||||||||||  | |||||||||||||    
25868807 cccaatctgatgtatgctaatttattaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt 25868906  T
379 gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaa 434  Q
    || | || |||||  |||||||||||  ||||||||||||||||||||||||||||    
25868907 gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaa 25868961  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 26496545 - 26496601
Alignment:
460 aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt 516  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
26496545 aattgttctataaaaagatcacaagaacttacttgaggcaagtctcattcttatttt 26496601  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 26496619 - 26496686
Alignment:
505 cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgat 573  Q
    |||||||||||||||  | || |||||||| | ||||  ||||||||| ||||||||||||||||||||    
26496619 cattcttattttcttctatgttcatttcttta-tcaagtcatggaaaaggtaataactctcattatgat 26496686  T

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Target: chr3 (Bit Score: 138; Significance: 9e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 179 - 440
Target Start/End: Complemental strand, 46595329 - 46595069
Alignment:
179 cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat 278  Q
    |||||||| ||||| ||||||||||||| ||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
46595329 cagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctat 46595230  T
279 ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt 378  Q
    | |||| || | ||||||||||||||| ||||| |||||||||| ||||||| |||| |||||||||  ||||||||||||||  | |||||||||||||    
46595229 cccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt 46595130  T
379 gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatggagg 440  Q
    || | || |||||  |||||||||||  |||||||||||||||||||||||||||| |||||    
46595129 gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggagg 46595069  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 505 - 626
Target Start/End: Complemental strand, 46594437 - 46594317
Alignment:
505 cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttct 604  Q
    |||||||||||||||  | ||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| |    
46594437 cattcttattttcttctatgtgcatttcttaa-tcaagtcatggaaaaggtaataactctcattatgattggaatttaaaattaacttagggttgttttt 46594339  T
605 tctccaatttctgaatatgaca 626  Q
    ||||||||||| ||||||||||    
46594338 tctccaatttcagaatatgaca 46594317  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 46594511 - 46594455
Alignment:
460 aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt 516  Q
    |||||||| ||||||||||||||||||||||||||||||||   |||||||||||||    
46594511 aattgttcgataaaaagatcacaagaacttacttgaggcaatcctcattcttatttt 46594455  T

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Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 179 - 439
Target Start/End: Original strand, 4435509 - 4435768
Alignment:
179 cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat 278  Q
    |||||||| ||||| ||||||||||||| ||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
4435509 cagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctat 4435608  T
279 ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattacattaattttgtatttt 378  Q
    | |||| || | ||||||||||||||| ||||| |||||||||| ||||||| |||| |||||||||  ||||||||||||||  | |||||||||||||    
4435609 cccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt 4435708  T
379 gtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatggag 439  Q
    || | || |||||  |||||||||||  |||||||||||||||||||||||||||| ||||    
4435709 gttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggag 4435768  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 246 - 434
Target Start/End: Original strand, 4091797 - 4091984
Alignment:
246 acctaattccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttg 345  Q
    |||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||| ||| | |||||||||| ||||||| ||||||||||||||    
4091797 acctaattccatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaatttcagaattaaatatctgggtttatttatgtttatttg 4091896  T
346 gattaacgttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaa 434  Q
      ||||||||||||||  | ||||||||||||||| | || |||||  |||||||||||  ||||||||||||||||||||||||||||    
4091897 atttaacgttaaattaagtgaattttgtattttgttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaa 4091984  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 505 - 626
Target Start/End: Original strand, 4436401 - 4436521
Alignment:
505 cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttct 604  Q
    |||||||||||||||  | ||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| |    
4436401 cattcttattttcttctatgtgcatttcttaa-tcaagtcatggaaaaggtaataactctcattatgattggaatttaaaattaacttagggttgttttt 4436499  T
605 tctccaatttctgaatatgaca 626  Q
    ||||||||||| ||||||||||    
4436500 tctccaatttcagaatatgaca 4436521  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 4436327 - 4436383
Alignment:
460 aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt 516  Q
    |||||||| ||||||||||||||||||||||||||||||||   |||||||||||||    
4436327 aattgttcgataaaaagatcacaagaacttacttgaggcaatcctcattcttatttt 4436383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 37719570 - 37719392
Alignment:
179 cagatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctccaggtattcaatctat 278  Q
    |||||||| ||||| ||||||||||||| ||||||||| |||| || |||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
37719570 cagatctcgaaatcctctgcatctcgatctgttggttttaacc-atgaaaaaacattgattttgctgacctaatttcatttctccaggtattcaatctat 37719472  T
279 ctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaa 358  Q
    | |||| || | |||||||||||| || ||||| |||||||||| ||||||| |||| |||||||||  |||||||||||    
37719471 cccaatctgatgtatgctaatttgctaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaa 37719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 165 - 420
Target Start/End: Complemental strand, 30440804 - 30440559
Alignment:
165 atctcacatcaattc-agatctcaaaatcatctgcatctcgatatgttggtttcaacctattaaaatacattgattttgctcacctaattccatttctcc 263  Q
    |||||||||||| || ||||||||||||| ||| ||||| ||| ||||||||| |||| || ||||| ||||||||||||| ||||||||||||||  ||    
30440804 atctcacatcaaatccagatctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaattccattttccc 30440705  T
264 aggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacgttaaattaca 363  Q
    ||||||||||| |          ||| ||||||||||||| | ||||| |||||||||| ||||||| ||||||||||||||  ||||||||||||||      
30440704 aggtattcaattt----------gttgtatgctaatttgtgaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaag 30440615  T
364 ttaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaa 420  Q
    | ||||||||||||||| |||| |||||  |||||||||||  |||| |||||||||    
30440614 tgaattttgtattttgttgttt-tattgaacaaacaatggtgttttttagaataaaa 30440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 505 - 626
Target Start/End: Complemental strand, 37718759 - 37718639
Alignment:
505 cattcttattttctttcacgtgcatttcttaaatcaatgcatggaaaatgtaataactctcattatgattggaatttaaaattaactttgtgtcgtttct 604  Q
    |||||||||||||||  | ||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| |    
37718759 cattcttattttcttctatgtgcatttcttaa-tcaagtcatggaaaaggtaataactctcattatgattggaatttaaaattaacttagggttgttttt 37718661  T
605 tctccaatttctgaatatgaca 626  Q
    ||||||||||| ||||||||||    
37718660 tctccaatttcagaatatgaca 37718639  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 37718833 - 37718778
Alignment:
460 aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttattt 515  Q
    |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
37718833 aattgttcgataaaaagatcacaagaacttacttgaggcaagcctcattcttattt 37718778  T

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Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 254 - 452
Target Start/End: Original strand, 47521067 - 47521264
Alignment:
254 ccatttctccaggtattcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggtttgtttatgtttatttggattaacg 353  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||| ||| |||||| ||||||| | |||||| |||||  ||||||    
47521067 ccatttctccaggtattcaatctatctcaatctgatgtatgctaatttgttaattttagaatcaaatatatgggtttatatatgttcatttgatttaacg 47521166  T
354 ttaaattacattaattttgtattttgtggtttgtattgggcaaacaatggtcattttgagaataaaaagtggtaaaaagaatggagggttttgtttaat 452  Q
    ||||||||  | ||||||||||||||| | || |||||  |||||||||||  |||||||||||||||||||||||||||| ||  |||| ||||||||    
47521167 ttaaattaagtgaattttgtattttgttg-ttatattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaat 47521264  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 47521828 - 47521884
Alignment:
460 aattgttcaataaaaagatcacaagaacttacttgaggcaagtttcattcttatttt 516  Q
    |||||||| ||||||| |||||||||||||||||||||||||  |||||||| ||||    
47521828 aattgttcgataaaaaaatcacaagaacttacttgaggcaagcctcattcttttttt 47521884  T

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Target: scaffold0405 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 633
Target Start/End: Complemental strand, 13256 - 13222
Alignment:
599 gtttcttctccaatttctgaatatgacaatgagga 633  Q
    |||||||||||||||||||||| ||||||||||||    
13256 gtttcttctccaatttctgaatctgacaatgagga 13222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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