View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235B-Insertion-9 (Length: 509)

Name: NF0235B-Insertion-9
Description: NF0235B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235B-Insertion-9
NF0235B-Insertion-9
[»] chr5 (1 HSPs)
chr5 (8-509)||(14695806-14696303)
[»] scaffold0189 (2 HSPs)
scaffold0189 (330-448)||(10561-10680)
scaffold0189 (352-448)||(10636-10732)
[»] chr2 (2 HSPs)
chr2 (325-443)||(35401035-35401153)
chr2 (327-393)||(38832829-38832895)
[»] chr8 (2 HSPs)
chr8 (329-483)||(993954-994108)
chr8 (326-394)||(43752765-43752832)
[»] chr4 (2 HSPs)
chr4 (114-303)||(27758224-27758413)
chr4 (326-443)||(27758127-27758243)
[»] chr7 (1 HSPs)
chr7 (325-393)||(48473913-48473981)
[»] chr3 (2 HSPs)
chr3 (129-207)||(28984025-28984103)
chr3 (329-362)||(28983195-28983228)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 14696303 - 14695806
Alignment:
Q  8 atacattacttcaatttcaagcaatgacatggtgagggtgatttgttacgacatgttggatgatacacctagttagacgagagattttgtgagaaagaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14696303 atacattacttcaatttcaagcaatgacatggtgagggtgatttgttaccacatgttggatgatacacctagttagacgagagattttttgagaaagaag 14696204  T
Q  108 agttacacttgtttacgtttagttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttag 207  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||    
T  14696203 agttacacttgattacatttagttaattccctttcctaattttatagtttggtttattttctttcctaaatttaagattctgttattttcttttctttag 14696104  T
Q  208 attaatgcaagttgttgtgccaatagtaatgatatatgttgtaaggggaaccaattctgatatgtcgaataataacaagttttcactttcttccttccnn 307  Q
    ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  14696103 att-atgcaagttgttgtgccaagagtaatgatatatgatgtaaggggaaccaattctgatatgtcgaataataacaagttttcactttcttccttc--- 14696008  T
Q  308 nnnnnnnnnnnnnnnnncaaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcat 407  Q
                     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||  ||||||||||||    
T  14696007 -aaaaaaaaaaaaaaaacaaggtttcactttcttccctaatttctcatctatttcctctataggagtttacactcacttaaagagtgccattttcttcat 14695909  T
Q  408 ctattttctctctaggagttagcacttactcgaagaatgcc-nnnnnnncactctaaaataattagggtgtatcattggactacacagttcagtgactaa 506  Q
    |||||||||||||||||||||||||| ||||||||| ||||        |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  14695908 ctattttctctctaggagttagcactcactcgaagagtgcctttttcttcactctaaaataattaaggtgtatcattggactacacagttcagttactaa 14695809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 330 - 448
Target Start/End: Original strand, 10561 - 10680
Alignment:
Q  330 tttcactttcttccctaatttctcatctattttctcta-taggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggagtta 428  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||     
T  10561 tttcactttctcccctaatttctcatctattttctctcctaggagtttacacttactcgaagagtgccattttcttcatctcttttctctctaggagttt 10660  T
Q  429 gcacttactcgaagaatgcc 448  Q
     |||| ||||||||| ||||    
T  10661 acactcactcgaagagtgcc 10680  T

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Target: scaffold0189; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 448
Target Start/End: Original strand, 10636 - 10732
Alignment:
Q  352 tcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggagttagcacttactcgaagaatgcc 448  Q
    |||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||| | |||||| |||| ||||||||| ||||    
T  10636 tcatctcttttctctctaggagtttacactcactcgaagagtgccattttcttcatctcttttctctccatgagttaacactcactcgaagagtgcc 10732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 325 - 443
Target Start/End: Original strand, 35401035 - 35401153
Alignment:
Q  325 caaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctagga 424  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||||| || ||||  |||||    
T  35401035 caaggtttcactttcttccataatttctcatctattttctctctaggagattacactcactcgaagagtgccattttcttcatctcttgtctcagtagga 35401134  T
Q  425 gttagcacttactcgaaga 443  Q
    |||  |||| |||||||||    
T  35401135 gttgacactcactcgaaga 35401153  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 38832829 - 38832895
Alignment:
Q  327 aggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagt 393  Q
    |||||||||||||||| | |||||||| ||   ||| ||||||||| || |||||||||||||||||    
T  38832829 aggtttcactttcttctccaatttctcttcacgtttttctataggatttgacactcactcgaagagt 38832895  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 329 - 483
Target Start/End: Original strand, 993954 - 994108
Alignment:
Q  329 gtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggagtta 428  Q
    ||||||||||||||| |||||||||||||  ||||||| ||||||||||||| || |||||||||  |||||| ||||||| | ||||||| ||||||||    
T  993954 gtttcactttcttccttaatttctcatctgatttctctctaggagtttacacgcattcgaagagtgccatttttttcatctctgttctctcaaggagtta 994053  T
Q  429 gcacttactcgaagaatgccnnnnnnncactctaaaataattagggtgtatcatt 483  Q
     |||| |||| |||| |||        |||||||| |||||||||||||||||||    
T  994054 acactcactcaaagagtgctttttcttcactctaagataattagggtgtatcatt 994108  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 43752765 - 43752832
Alignment:
Q  326 aaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtc 394  Q
    ||||||||| ||||||| | || ||||| || | ||||||| |||||||| ||||||||||||||||||    
T  43752765 aaggtttcagtttcttctccaaattctcttc-actttctctctaggagttgacactcactcgaagagtc 43752832  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 303
Target Start/End: Complemental strand, 27758413 - 27758224
Alignment:
Q  114 acttgtttacgtttagttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttagattaat 213  Q
    ||||| |||| || ||||| |||| ||| |||||||||| |||| |||||||||||||  |||||||| ||||  ||||||| | ||| |||||||| ||    
T  27758413 acttgattacattaagttatttcctttttctaattttatggtttagtttatttccttttctaaatttatgattatgttatttcccttttcttagatt-at 27758315  T
Q  214 gcaagttgttgtgccaatagtaatgatatatgttgtaa-ggggaaccaattctgatatgtcgaataataacaagttttcactttcttcctt 303  Q
    |||||||||| ||| || | | |  ||||||| |||||  | |||||||||| ||||||| ||||||||| ||| ||||||||||||||||    
T  27758314 gcaagttgttatgctaagattgactatatatgatgtaatagtgaaccaattcagatatgttgaataataataaggtttcactttcttcctt 27758224  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 326 - 443
Target Start/End: Complemental strand, 27758243 - 27758127
Alignment:
Q  326 aaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggag 425  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||  |||||||| ||||||||| ||| | | ||||||||||| |||||||||||||||    
T  27758243 aaggtttcactttcttccttaatttgtcatctattttctctctaaaagtttacattcactcgaaaagtgtta-tttcttcatctcttttctctctaggag 27758145  T
Q  426 ttagcacttactcgaaga 443  Q
    |   |||| |||||||||    
T  27758144 tcgacactcactcgaaga 27758127  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 48473913 - 48473981
Alignment:
Q  325 caaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagt 393  Q
    ||||| |||||||||||||| ||||| |||||| |||||||| |||||||  |||||||||||||||||    
T  48473913 caagggttcactttcttccccaatttttcatctcttttctctctaggagtcgacactcactcgaagagt 48473981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 28984103 - 28984025
Alignment:
Q  129 gttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttag 207  Q
    |||| |||||||| |||||||||  |||  |||||||||||||| || ||||| ||||  ||||||||| |||||||||    
T  28984103 gttatttccctttactaattttacggttcagtttatttcctttcctagatttatgattatgttattttcctttccttag 28984025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 28983228 - 28983195
Alignment:
Q  329 gtttcactttcttccctaatttctcatctatttt 362  Q
    |||||||||||| |||||||||||||||||||||    
T  28983228 gtttcactttctcccctaatttctcatctatttt 28983195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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