View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco1 (Length: 389)
Name: NF0235Eco1
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco1 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 7759332 - 7759513
Alignment:
| Q |
8 |
agtttgattcctaaaacaaaaaaggttggtcgatataacgatagcgataaaaatttagagggggtgaatgaattttctcttgaaaactttgcgcataaac |
107 |
Q |
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| T |
7759332 |
agtttgattcctaaaacaataaaggttggtcgatataacgatagcgatacaaatttagagggggtgaatgaattttctcttgaaaactttgcgcataaac |
7759431 |
T |
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| Q |
108 |
tttctgtattcgatcgattgcctattggaaacagtgcaattccaataaagataaactaagtaaacaatttgatattatgctaatta |
193 |
Q |
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| T |
7759432 |
tttctgtat----tcgattgcctattggaaacagtgcaattccaataaacataaactaagtaaacaatttgatattatactaatta |
7759513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 250 - 386
Target Start/End: Original strand, 7759509 - 7759645
Alignment:
| Q |
250 |
aattaggttcaaaacattcgatcacttaacacaaagtaattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaagga |
349 |
Q |
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| T |
7759509 |
aattaggttcaaaacattcattcacttaacacgaagtaattaaccttatcactaattatcatatatcaaattgtaaattgcggaaattaaagagaaatga |
7759608 |
T |
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| Q |
350 |
aaagaaaacaccagggtttatagtgaccccctaattg |
386 |
Q |
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| T |
7759609 |
agagaaaacaacagggtttatagtgaccccccaattg |
7759645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 29928079 - 29927990
Alignment:
| Q |
286 |
taattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagag-aaaggaaaagaaaacaccagggtttatagtg |
374 |
Q |
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| T |
29928079 |
taattaacctaatcaataaatatcatatatcaaacggtaaattgcaaaaattaaagagaaaaggagaaggaaacacttgtgtttatagtg |
29927990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 31639206 - 31639135
Alignment:
| Q |
304 |
attatcatatatcaaattataaattgcggaaattaaagagaaaggaaaagaaaacaccagggtttatagtga |
375 |
Q |
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| T |
31639206 |
attatcatatatcaaattgtaaattgcagaaattaaagagaaaggaagagaaaatactagtgtttatagtga |
31639135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 27595437 - 27595506
Alignment:
| Q |
287 |
aattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaaggaaaagaaa |
356 |
Q |
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| T |
27595437 |
aattaacctaatcaacaattatcatatatcaaattataaattgtagaaattaaagaaaaaggaagagaaa |
27595506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 9777 - 9706
Alignment:
| Q |
286 |
taattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaaggaaaagaaaa |
357 |
Q |
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| T |
9777 |
taattaatctaatcaacaatcatcatatatcaaattgtaaatttcagaaattaaagagaaatgaagagaaaa |
9706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 8142245 - 8142314
Alignment:
| Q |
306 |
tatcatatatcaaattataaattgcggaaatt-aaagagaaaggaaaagaaaacaccagggtttatagtg |
374 |
Q |
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| T |
8142245 |
tatcatatatcaaattataaaatgttgaatttaaaagagaaaggaagagaaaacactggcgtttatagtg |
8142314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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