View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco10 (Length: 243)
Name: NF0235Eco10
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco10 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 14398074 - 14397910
Alignment:
| Q |
69 |
caattgcatttgtactaatttttctgttggaccttttttaaaaccttgttttaaatttcacctatcattgcaaccttattacaatgatatagattataga |
168 |
Q |
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| T |
14398074 |
caattgcatttgtactaatttttctgttggaccttttttaaaaccttgttttaaatttcacctatcattgcaaccttattacaatgatatagattataga |
14397975 |
T |
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| Q |
169 |
cattaaaaattttaatatcaattattttgtagaatgttgttgtgtcaaatctaattgatctggct |
233 |
Q |
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| T |
14397974 |
cattaaaaattttaatatcaattattttgtagaatgttgttgtgtcaaatctaattgatccggct |
14397910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 50716088 - 50716023
Alignment:
| Q |
9 |
tatctatacgtggtagattaccaacttgtgatattgagttaatttggaatacaatatacccaattg |
74 |
Q |
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| T |
50716088 |
tatctatatgtggtagattaccaacttgtgatattgagttaatttggaatacaatatacccaattg |
50716023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 31929381 - 31929320
Alignment:
| Q |
12 |
ctatacgtggtagattaccaacttgtgata--ttgagttaatttggaatacaatatacccaa |
71 |
Q |
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|||||| ||||||||||||||||||||||| |||||| |||||| ||||||| ||||||| |
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| T |
31929381 |
ctatacatggtagattaccaacttgtgataggttgagtaaatttgagatacaatgtacccaa |
31929320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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