View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco13 (Length: 361)
Name: NF0235Eco13
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco13 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 14418082 - 14418428
Alignment:
| Q |
7 |
agtattagcataagggattagactcccacaacatgactaactaagatttaaatctcgattaaaagatgtacccatatttaatttaatgctcaaacactcc |
106 |
Q |
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| T |
14418082 |
agtattagcataagggattagactcccacaacatgactaactaagatttaaatctcgactaaaagatgtacccgtatttaatttaatggtcaaacactcc |
14418181 |
T |
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| Q |
107 |
ttaaacnnnnnnnnnnnnnnnnntattcatataagaaaaggagacgacatctggccttccctgaatagatgcatatcacacatcactttaagcttctcta |
206 |
Q |
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| T |
14418182 |
ttgaacaaaaataaaa-------tattcatataagaaatggagacgacatctggccttccctgaatagatgcatatcacacatcactttaagcttctcta |
14418274 |
T |
|
| Q |
207 |
gccaatcagaagattagatcaatagcataaaactctcaactaaataagaaaataaatgcataaaatgacctttagctttgtgatattaaccaatataaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
14418275 |
gccaatcagaagattagatcaatagcataaaactctcaactaaataagaaaagaaatgcataaaatgacctttagctttgtgatattgaccaatgtaaac |
14418374 |
T |
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| Q |
307 |
cttccgactttgaataaagaacgttgaaacttttgttcatcagcaacaattggt |
360 |
Q |
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| T |
14418375 |
cttccgactttgaataaagaacgttgaaacttttgttcatcagcaacaattggt |
14418428 |
T |
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