View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco15 (Length: 125)
Name: NF0235Eco15
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco15 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 7e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 25882737 - 25882624
Alignment:
| Q |
9 |
gtaccccattcccaagcactaccttatacacaatccctaacccacttttccctaacacatatgcagaagctcttaacaattcatcaagttcaaagctaaa |
108 |
Q |
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| T |
25882737 |
gtaccccattcccaagcactaccttatacacaatccctaacccacttttccctaacacatatgcagaagcccttaacaattcatcaagttcaaagctaaa |
25882638 |
T |
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| Q |
109 |
acctttatcaattg |
122 |
Q |
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| T |
25882637 |
acctttatcaattg |
25882624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 4031937 - 4032046
Alignment:
| Q |
13 |
cccattcccaagcactaccttatacacaatccctaacccacttttccctaacacatatgcagaagctcttaacaattcatcaagttcaaagctaaaacct |
112 |
Q |
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|||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||| || || | || | |||||||| |||| ||||||||| |
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| T |
4031937 |
cccatttccaagcaccaccttatacacaatccctaatgcactcttccctaacacatatgctgatgccttcaaaagctcatcaagctcaatcctaaaacct |
4032036 |
T |
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| Q |
113 |
ttatcaattg |
122 |
Q |
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| T |
4032037 |
ttgtcaattg |
4032046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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