View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco20 (Length: 481)
Name: NF0235Eco20
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco20 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 30494771 - 30494303
Alignment:
| Q |
10 |
actagtacagacatatcatctgttgcaatcaaaccattagcgaggtacatttgatcgagagttggtccttcaagaagggaaagattgttccgagcaaaat |
109 |
Q |
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| T |
30494771 |
actagtacagacatatcatctgttgcaatcaaaccattagcgaggtacatttgatcgagggttggtccttcaagaagggaaagattgttccgagcaaaat |
30494672 |
T |
|
| Q |
110 |
agcttcctttctccaataccaacactttataaccactttttgcgagaactcccgctgccacgccacctcctgagccagaaccaacaaccactgcatcaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30494671 |
agcttcctttctccaataccaacactttataaccactttttgctagaactcccgctaccacgccacctcctgagccagaaccaacaaccactgcatcaca |
30494572 |
T |
|
| Q |
210 |
ttggataactagagaaggagatgagatggtagaagctttattcgttagaggagtgaccgagacagggaatccaaatcgtcttagagaatctgaaatgata |
309 |
Q |
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| T |
30494571 |
ttggataactagagaaggagatgagatggtagaagctttattcgttggaggagtgaccgagacagggaatccaaatcgtcttagagaatctgaaatgata |
30494472 |
T |
|
| Q |
310 |
tcacgcgggtagttcagattgacaaggcctttgtaaagaggtcctataacttcttcatcatcatgatcacaatcttctttttcttgtcgtccttctttgg |
409 |
Q |
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| T |
30494471 |
tcacgcgggtagttcagattgacaaggccttcgtaaagaggtcctataacttcttcatcatcatgatcacaatcttctttttcttgtcgtccttctttgg |
30494372 |
T |
|
| Q |
410 |
atgttttatgtaaaattttgttctttcgctgcgctttgaactcttgatcaggtccactatatctaattg |
478 |
Q |
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| T |
30494371 |
atgttttatgtaaaattttgttctttcgctgcgctttgaactcttgatcaggtccactatatccaattg |
30494303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 10450664 - 10450876
Alignment:
| Q |
21 |
catatcatctgttgcaatcaaaccattagcgaggtacatttgatcgagagttggtccttcaagaagggaaagattgttccgagcaaaatagcttcctttc |
120 |
Q |
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||||||||| ||||||| ||||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||||||| |||| |||||| ||||||| |
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| T |
10450664 |
catatcatcagttgcaaccaaaccaccagcttggtacatttgatccattgttggtccttcaagaagagaaagattgttcctagcagaatagcctcctttc |
10450763 |
T |
|
| Q |
121 |
tccaataccaacactttataaccactttttgcgagaactcccgctgccacgccacctcctgagccagaaccaacaaccactgcatcacattggataacta |
220 |
Q |
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||||| ||||||||||| ||||| || || |||| ||| ||| | || |||||||||||||| |||||||| ||||| || || ||||| | ||||| |
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| T |
10450764 |
tccaaaaccaacactttgtaaccggcattcgccagaattccggctacaactccacctcctgagccggaaccaactaccacagcgtcgcattgtacaacta |
10450863 |
T |
|
| Q |
221 |
gagaaggagatga |
233 |
Q |
| |
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|||||||||||| |
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| T |
10450864 |
aagaaggagatga |
10450876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 10450914 - 10451002
Alignment:
| Q |
268 |
gagacagggaatccaaatcgtcttagagaatctgaaatgatatcacgcgggtagttcagattgacaaggcctttgtaaagaggtcctat |
356 |
Q |
| |
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||||| |||||||||||||||||||||| || |||||| || | ||| ||||| |||| ||| || |||||||||||||||||||| |
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| T |
10450914 |
gagacggggaatccaaatcgtcttagagtgtcgacaatgatgtctctcggatagttgagatggacgagccctttgtaaagaggtcctat |
10451002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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