View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco23 (Length: 259)
Name: NF0235Eco23
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco23 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 8738309 - 8738055
Alignment:
| Q |
10 |
ctccaccctttgttgagctggagatagaccttgtacttatgtaatcaagctttcatgcatccccttcaatgaagccatctcaaccaaccttggcagtctt |
109 |
Q |
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| T |
8738309 |
ctccaccctttgttgagctggagatagaccttgtacttatgtaatcaagctttcatgtgtccccttcaatgaagccatctcagccaaccttgacagtctt |
8738210 |
T |
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| Q |
110 |
tcctgatcagtcaaactgcttctgccatcaaccacttgaagtgctagaacctgttcctcaagctgagttggttgcagagt---------ttgctgaatta |
200 |
Q |
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| T |
8738209 |
tcctgattagtcaaactgcttctgccatcaaccacttgaagttccagaacttgttcctcaagctgagttggttgcagagtttgatttgattgctgaatta |
8738110 |
T |
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| Q |
201 |
gagtaggtatgagtgaattactcgtaggactactctataggttcaactcttaattg |
256 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
8738109 |
gagtaggtatgagagaa-tactcgtaggactactctataggttcaattctcaattg |
8738055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 9090547 - 9090293
Alignment:
| Q |
10 |
ctccaccctttgttgagctggagatagaccttgtacttatgtaatcaagctttcatgcatccccttcaatgaagccatctcaaccaaccttggcagtctt |
109 |
Q |
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| T |
9090547 |
ctccaccctttgttgagctggagatagaccttgtacttatgtaatcaagctttcatgtgtccccttcaatgaagccatctcagccaaccttgacagtctt |
9090448 |
T |
|
| Q |
110 |
tcctgatcagtcaaactgcttctgccatcaaccacttgaagtgctagaacctgttcctcaagctgagttggttgcagagt---------ttgctgaatta |
200 |
Q |
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| T |
9090447 |
tcctgattagtcaaactgcttctgccatcaaccacttgaagttccagaacttgttcctcaagctgagttggttgcagagtttgatttgattgctgaatta |
9090348 |
T |
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| Q |
201 |
gagtaggtatgagtgaattactcgtaggactactctataggttcaactcttaattg |
256 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
9090347 |
gagtaggtatgagagaa-tactcgtaggactactctataggttcaattctcaattg |
9090293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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