View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235Eco29 (Length: 365)
Name: NF0235Eco29
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco29 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 3822469 - 3822754
Alignment:
| Q |
10 |
ttatatcttgaaacatgaatggaaaaaactgaagtgtctttagttaagattgagtttgcctttaatacctcaaatttgattcatccattggccactccga |
109 |
Q |
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| T |
3822469 |
ttatatcttgaaacatgaatggaaaaaaatgaagtgtctt-agttaagattgagtttgcctttaatacctcaaatttgattcatccattggccactccga |
3822567 |
T |
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| Q |
110 |
tggtgggaatgatgagtggataagaatatataaggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaatat |
209 |
Q |
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| T |
3822568 |
tggtgggaatgatgagtggataagaatatatgaggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaatat |
3822667 |
T |
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| Q |
210 |
tggttcttaaattcagaattttcatttgactctgaccatacttttctagagagtctat------gatgagtggatttgaatacgcta |
290 |
Q |
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| T |
3822668 |
tggttcttaaattcaggattttcatttgactctgaccatacttttctagagagtctatgtattagatgagtggatttgaatacgcta |
3822754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 3822907 - 3822973
Alignment:
| Q |
290 |
actcttagatgaggtatttcactagtcaaatgatgagttcaatttgttaataaacttcacttaaggg |
356 |
Q |
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| T |
3822907 |
actcttagatgaggtatttcactagtcaaatgatgagttcaatttgttaataaacttcacttaaggg |
3822973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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