View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235Eco30 (Length: 96)
Name: NF0235Eco30
Description: NF0235-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235Eco30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 42307943 - 42307859
Alignment:
| Q |
10 |
tgcatgtgtcaaacaaaaggagtctgttttgcattcatggaaaatttgagcgcaaattagttggatatatttcatggctaattgg |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
42307943 |
tgcatgtgtcaaacaaaaggagtctgttttgcattcatggaaaatttgagcgcaaattggttggatatatttcatggccaattgg |
42307859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1577 times since January 2019
Visitors: 2392