View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0235_1D_high_14 (Length: 312)
Name: NF0235_1D_high_14
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0235_1D_high_14
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 42342523 - 42342817
Alignment:
Q
1
tttctacatgtaaaatgttacaagtacagcatgaagtctactttataatagtattattgtttgcttatagtgaattacaaaatggatataggcagaagct
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42342523
tttctacatgtaaaatgttacaagtacagcatgaagtctactttataatagtattattgtttgcttatagtgaattacaaaatggatataggcagaagct
42342622
T
Q
101
tacaatgattatctagtgacatccttctctagatatattagcattcaattacttagccactgtattattttacatctttccaaatgtgtcattcaatcat
200
Q
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
T
42342623
tacaatgattatctagtgacatctttctctagatatattagcattcaattacttagccactatattattttacatctttccaaatgggtcattcaatcat
42342722
T
Q
201
agtttatttgagcttgtgcagattcaacagtttttgaaagagttagagggtgatttcctgaaggtaacaaacatcttatttaatgtctttgatgt
295
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
T
42342723
agtttatttgagcttgtgcagattcaacagtttttgaaagagttagagggtgaattcctgaaggtaacaaacatcttatttaatgtcttttatgt
42342817
T
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