View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0235_1D_high_17 (Length: 254)
Name: NF0235_1D_high_17
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0235_1D_high_17
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 7184206 - 7183987
Alignment:
Q
23
tactcgtggtagatctggtgatatctccttggggttcagtcgaacctttcaccatctttcccaaacttcttatcgcggggattctagaatctgcttttcg
122
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
T
7184206
tactcgtggtagatctggtgatatctccttggggttcagtcgaacctttcaccatctttcccaaacttcttatcgcggggattctaga-tcttcttttcg
7184108
T
Q
123
ctccgggatgtcattgctttgccgaccttttgcatctcttcgtactgtatgtacttctcagctttctccaatagattattgaaatcgtttagcttgtctt
222
Q
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
7184107
ctccgggatgtcattgctttgtcgaccttttgcatctcttcgtactgtatgtacttctcagctttctccaatagattattgaaatcgtttagcttgtctt
7184008
T
Q
223
ttctgatgttatccacgaact
243
Q
|||||||||||||||||||||
T
7184007
ttctgatgttatccacgaact
7183987
T
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Alignment Overview ]
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