View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235_1D_high_7 (Length: 408)
Name: NF0235_1D_high_7
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 11681224 - 11680861
Alignment:
| Q |
22 |
tcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatccccttatcataagaaaaatcattccatttcgcg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11681224 |
tcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatccccttatcataa-aaaaatcattccatttcgcg |
11681126 |
T |
|
| Q |
122 |
cctttcatatagccgcatgcgaaataagccaatagcctttttccaatttcttttaaggacaccatccaacaaatactcagtttgaatcaatgagttcagt |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681125 |
cctttcatatagccgcatgccaaataagccaatagcctttttccaatttcttttaaggacaccatccaacaaatactcagtttgaatcaatgagttcagt |
11681026 |
T |
|
| Q |
222 |
ggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcaggaaaaggtgaagggcagtctcctctccat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681025 |
ggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcaggaaaaggtgaagggcagtctcctctccat |
11680926 |
T |
|
| Q |
322 |
tggttcaaaaaacacattcaactgcaacctcaagatcgaaacaaataaacgtttatccctgccat |
386 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11680925 |
tggttcaaaaaacacattcatctgcaacctcaagatcgaaacaaataaacgtttatccctgccat |
11680861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2704 times since January 2019
Visitors: 2402